RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 HAPLN1P10915 354 aaPredicted RBP10.05□□□□□ -0.8
LIG3-216ENST00000593099 NR1D1P20393 614 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 RBL1P28749 1068 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 MAGEA11P43364 429 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 MON1BQ7L1V2 547 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 FUKQ8N0W3 1084 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 OR8D1Q8WZ84 308 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 PPP1R10Q96QC0 940 aaKnown RBP10.05□□□□□ -0.8
LIG3-216ENST00000593099 FAM167BQ9BTA0 163 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 PRKD2Q9BZL6 878 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 WHRNQ9P202 907 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 HMGXB4Q9UGU5 601 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 TRMT6Q9UJA5 497 aaKnown RBP10.05□□□□□ -0.8
LIG3-216ENST00000593099 KAT6AQ92794 2004 aa10.05□□□□□ -0.8
LIG3-216ENST00000593099 YJEFN3A6XGL0 299 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 E7ENQ6 273 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 C1RP00736 705 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 CYP1A1P04798 512 aaPredicted RBP10.04□□□□□ -0.8
LIG3-216ENST00000593099 RHOQP17081 205 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 YBEYP58557 167 aaPredicted RBP10.04□□□□□ -0.8
LIG3-216ENST00000593099 IMPG1Q17R60 797 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 LRRC26Q2I0M4 334 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 PPP1R15BQ5SWA1 713 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 BBS12Q6ZW61 710 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 CRLF3Q8IUI8 442 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 PSTKQ8IV42 348 aaKnown RBP10.04□□□□□ -0.8
LIG3-216ENST00000593099 SH3RF2Q8TEC5 729 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 GPR62Q9BZJ7 368 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 A0A1B0GVM2 712 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 TCAF2A6NFQ2 919 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 SRP72O76094 671 aaKnown RBP10.04□□□□□ -0.8
LIG3-216ENST00000593099 GPD2P43304 727 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 VSNL1P62760 191 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 MMEL1Q495T6 779 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 ADCK2Q7Z695 626 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 NOA1Q8NC60 698 aaKnown RBP10.04□□□□□ -0.8
LIG3-216ENST00000593099 FGD4Q96M96 766 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 LPIN3Q9BQK8 851 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 EPC1Q9H2F5 836 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 SIX2Q9NPC8 291 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 GTSE1Q9NYZ3 720 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 RCOR3Q9P2K3 495 aaPredicted RBP10.04□□□□□ -0.8
LIG3-216ENST00000593099 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.04□□□□□ -0.8
LIG3-216ENST00000593099 ERI2A8K979 691 aaKnown RBP10.04□□□□□ -0.8
LIG3-216ENST00000593099 VPS26AO75436 327 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 SNRPAP09012 282 aaKnown RBP10.04□□□□□ -0.8
LIG3-216ENST00000593099 PCYT1AP49585 367 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 PARP6Q2NL67 630 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 TTC7BQ86TV6 843 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 PLEKHO2Q8TD55 490 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 ABHD8Q96I13 439 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 TWNKQ96RR1 684 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 CXorf56Q9H5V9 222 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 PCDH18Q9HCL0 1135 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 MIOSQ9NXC5 875 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 PSMC3IPQ9P2W1 217 aaPredicted RBP10.04□□□□□ -0.8
LIG3-216ENST00000593099 NOCTQ9UK39 431 aaKnown RBP10.04□□□□□ -0.8
LIG3-216ENST00000593099 DNPEPQ9ULA0 475 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 RAD54BQ9Y620 910 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 SUN1O94901 812 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 GJB5O95377 273 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 GLP2RO95838 553 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 CCNB1P14635 433 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 CES1P23141 567 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 NPY2RP49146 381 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 POU6F1Q14863 301 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 RASIP1Q5U651 963 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 FBXO38Q6PIJ6 1188 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 CCNI2Q6ZMN8 369 aaPredicted RBP10.04□□□□□ -0.8
LIG3-216ENST00000593099 OOSP2Q86WS3 158 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 CXorf40AQ8TE69 158 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 YY1AP1Q9H869 796 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 ARHGEF4Q9NR80 690 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 PKD2L2Q9NZM6 624 aa10.04□□□□□ -0.8
LIG3-216ENST00000593099 A0A0A0MRY4 1105 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 KCNU1A8MYU2 1149 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 SPECC1L-ADORA2AF8WAN1 911 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 DDHD2O94830 711 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 ESRRBO95718 433 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 RASSF2P50749 326 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 THOP1P52888 689 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 KDSRQ06136 332 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 SOX4Q06945 474 aaPredicted RBP10.03□□□□□ -0.8
LIG3-216ENST00000593099 INCA1Q0VD86 236 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 HGSNATQ68CP4 663 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 GRASPQ7Z6J2 395 aaPredicted RBP10.03□□□□□ -0.8
LIG3-216ENST00000593099 CXorf38Q8TB03 319 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 SPATA13Q96N96 652 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 RHOBTB2Q9BYZ6 727 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 VRTNQ9H8Y1 702 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 PTPRHQ9HD43 1115 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 CLIC5Q9NZA1 410 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 SHOC2Q9UQ13 582 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 MYH8P13535 1937 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 TMCC1O94876 653 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 DNTTP04053 509 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 TAS2R40P59535 323 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 MMRN1Q13201 1228 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 PARP15Q460N3 678 aa10.03□□□□□ -0.8
LIG3-216ENST00000593099 RFWD3Q6PCD5 774 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms