RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 TFE3P19532 575 aaPredicted RBP21.11■□□□□ 0.97
SHMT1-209ENST00000582653 MZF1P28698 734 aaPredicted RBP21.11■□□□□ 0.97
SHMT1-209ENST00000582653 NOS2P35228 1153 aa21.11■□□□□ 0.97
SHMT1-209ENST00000582653 GGCXP38435 758 aa21.11■□□□□ 0.97
SHMT1-209ENST00000582653 IRAK1P51617 712 aa21.11■□□□□ 0.97
SHMT1-209ENST00000582653 GALCP54803 685 aa21.11■□□□□ 0.97
SHMT1-209ENST00000582653 RNASE9P60153 205 aaKnown RBP21.11■□□□□ 0.97
SHMT1-209ENST00000582653 CENPCQ03188 943 aa21.11■□□□□ 0.97
SHMT1-209ENST00000582653 CST6Q15828 149 aa21.11■□□□□ 0.97
SHMT1-209ENST00000582653 FBXL22Q6P050 247 aa21.11■□□□□ 0.97
SHMT1-209ENST00000582653 SLC26A9Q7LBE3 791 aa21.11■□□□□ 0.97
SHMT1-209ENST00000582653 PNPLA1Q8N8W4 532 aa21.11■□□□□ 0.97
SHMT1-209ENST00000582653 FAM129BQ96TA1 746 aa21.11■□□□□ 0.97
SHMT1-209ENST00000582653 ORAI3Q9BRQ5 295 aa21.11■□□□□ 0.97
SHMT1-209ENST00000582653 NAA15Q9BXJ9 866 aaKnown RBP21.11■□□□□ 0.97
SHMT1-209ENST00000582653 SNX11Q9Y5W9 270 aa21.11■□□□□ 0.97
SHMT1-209ENST00000582653 ITIH6Q6UXX5 1313 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 SPEGQ15772 3267 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 EDDM13A0A1B0GTR0 161 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 DAB1O75553 588 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 UCHL3P15374 230 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 STK19P49842 368 aaPredicted RBP21.1■□□□□ 0.97
SHMT1-209ENST00000582653 PLK1P53350 603 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 SNX16P57768 344 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 AUHQ13825 339 aaKnown RBP21.1■□□□□ 0.97
SHMT1-209ENST00000582653 C2CD6Q53TS8 623 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 OTUD1Q5VV17 481 aaPredicted RBP21.1■□□□□ 0.97
SHMT1-209ENST00000582653 KIAA0895LQ68EN5 471 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 SLCO6A1Q86UG4 719 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 TMEM35BQ8NCS4 154 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 BAHD1Q8TBE0 780 aaPredicted RBP21.1■□□□□ 0.97
SHMT1-209ENST00000582653 GPT2Q8TD30 523 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 RHBDD1Q8TEB9 315 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 GANCQ8TET4 914 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 PTPRN2Q92932 1015 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 RPRD1AQ96P16 312 aaPredicted RBP21.1■□□□□ 0.97
SHMT1-209ENST00000582653 VPS16Q9H269 839 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 NEUROG2Q9H2A3 272 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 SERGEFQ9UGK8 458 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 ADAMTS1Q9UHI8 967 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 VANGL2Q9ULK5 521 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 HS3ST4Q9Y661 456 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 AKAP13Q12802 2813 aa21.1■□□□□ 0.97
SHMT1-209ENST00000582653 MID1O15344 667 aa21.09■□□□□ 0.97
SHMT1-209ENST00000582653 FLRT2O43155 660 aa21.09■□□□□ 0.97
SHMT1-209ENST00000582653 IGHV4-34P06331 123 aa21.09■□□□□ 0.97
SHMT1-209ENST00000582653 EEF1GP26641 437 aaKnown RBP21.09■□□□□ 0.97
SHMT1-209ENST00000582653 SLC8A1P32418 973 aa21.09■□□□□ 0.97
SHMT1-209ENST00000582653 NNMTP40261 264 aa21.09■□□□□ 0.97
SHMT1-209ENST00000582653 RACK1P63244 317 aaKnown RBP21.09■□□□□ 0.97
SHMT1-209ENST00000582653 NUMA1Q14980 2115 aa21.09■□□□□ 0.97
SHMT1-209ENST00000582653 CT47A1Q5JQC4 288 aaPredicted RBP21.09■□□□□ 0.97
SHMT1-209ENST00000582653 RABGAP1LQ5R372 815 aa21.09■□□□□ 0.97
SHMT1-209ENST00000582653 RNF219Q5W0B1 726 aaPredicted RBP21.09■□□□□ 0.97
SHMT1-209ENST00000582653 CXorf57Q6NSI4 855 aaKnown RBP21.09■□□□□ 0.97
SHMT1-209ENST00000582653 C14orf80Q86SX3 495 aa21.09■□□□□ 0.97
SHMT1-209ENST00000582653 NOP9Q86U38 636 aaKnown RBP21.09■□□□□ 0.97
SHMT1-209ENST00000582653 MMAAQ8IVH4 418 aaKnown RBP21.09■□□□□ 0.97
SHMT1-209ENST00000582653 ZNF397Q8NF99 534 aaPredicted RBP21.09■□□□□ 0.97
SHMT1-209ENST00000582653 OR52K2Q8NGK3 314 aa21.09■□□□□ 0.97
SHMT1-209ENST00000582653 ENOX1Q8TC92 643 aaKnown RBP21.09■□□□□ 0.97
SHMT1-209ENST00000582653 ZCCHC14Q8WYQ9 949 aaKnown RBP21.09■□□□□ 0.97
SHMT1-209ENST00000582653 NPY6RQ99463 290 aa21.09■□□□□ 0.97
SHMT1-209ENST00000582653 CDC6Q99741 560 aa21.09■□□□□ 0.97
SHMT1-209ENST00000582653 OMDQ99983 421 aa21.09■□□□□ 0.97
SHMT1-209ENST00000582653 SIK2Q9H0K1 926 aa21.09■□□□□ 0.97
SHMT1-209ENST00000582653 ANLNQ9NQW6 1124 aa21.09■□□□□ 0.97
SHMT1-209ENST00000582653 PIGVQ9NUD9 493 aa21.09■□□□□ 0.97
SHMT1-209ENST00000582653 FZD4Q9ULV1 537 aa21.09■□□□□ 0.97
SHMT1-209ENST00000582653 A0A1B0GVM2 712 aa21.08■□□□□ 0.97
SHMT1-209ENST00000582653 A0A1W2PP55 124 aa21.08■□□□□ 0.97
SHMT1-209ENST00000582653 A0A1W2PPC4 97 aa21.08■□□□□ 0.97
SHMT1-209ENST00000582653 TCAF2A6NFQ2 919 aa21.08■□□□□ 0.97
SHMT1-209ENST00000582653 FAM47DPA6NHR8 397 aa21.08■□□□□ 0.97
SHMT1-209ENST00000582653 SRRM3A6NNA2 597 aaPredicted RBP21.08■□□□□ 0.97
SHMT1-209ENST00000582653 PAGE1O75459 146 aa21.08■□□□□ 0.97
SHMT1-209ENST00000582653 CAPNS1P04632 268 aa21.08■□□□□ 0.97
SHMT1-209ENST00000582653 VAV1P15498 845 aa21.08■□□□□ 0.97
SHMT1-209ENST00000582653 CDH5P33151 784 aaPredicted RBP21.08■□□□□ 0.97
SHMT1-209ENST00000582653 KLK7P49862 253 aa21.08■□□□□ 0.97
SHMT1-209ENST00000582653 SULT2A1Q06520 285 aa21.08■□□□□ 0.97
SHMT1-209ENST00000582653 MTA1Q13330 715 aa21.08■□□□□ 0.97
SHMT1-209ENST00000582653 TTC39BQ5VTQ0 682 aaPredicted RBP21.08■□□□□ 0.97
SHMT1-209ENST00000582653 ZDHHC17Q8IUH5 632 aa21.08■□□□□ 0.97
SHMT1-209ENST00000582653 STK40Q8N2I9 435 aa21.08■□□□□ 0.97
SHMT1-209ENST00000582653 PPP1R9BQ96SB3 815 aa21.08■□□□□ 0.97
SHMT1-209ENST00000582653 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.08■□□□□ 0.97
SHMT1-209ENST00000582653 SNX10Q9Y5X0 201 aa21.08■□□□□ 0.97
SHMT1-209ENST00000582653 LRRC72A6NJI9 287 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 C10orf142B7Z368 130 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 I6L893 689 aaPredicted RBP21.07■□□□□ 0.96
SHMT1-209ENST00000582653 KCNK3O14649 394 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 DFNA5O60443 496 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 RNASEH2AO75792 299 aaKnown RBP21.07■□□□□ 0.96
SHMT1-209ENST00000582653 ADCY5O95622 1261 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 MMEP08473 750 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 C5AR1P21730 350 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 CTSKP43235 329 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 GABRB2P47870 512 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 SULT1E1P49888 294 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms