RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 C8orf33Q9H7E9 229 aaPredicted RBP10.71□□□□□ -0.69
SS18-221ENST00000582448 APOBEC3GQ9HC16 384 aaKnown RBP10.71□□□□□ -0.69
SS18-221ENST00000582448 TRPV5Q9NQA5 729 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 CISHQ9NSE2 258 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 SLC38A7Q9NVC3 462 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 C2orf42Q9NWW7 574 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 CNTN6Q9UQ52 1028 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 CAPN6Q9Y6Q1 641 aa10.71□□□□□ -0.69
SS18-221ENST00000582448 CTAGE15A4D2H0 777 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 EFCAB8A8MWE9 144 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 K7ESF4 209 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 SYN3O14994 580 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 CTIFO43310 598 aaKnown RBP10.7□□□□□ -0.7
SS18-221ENST00000582448 LSM8O95777 96 aaKnown RBP10.7□□□□□ -0.7
SS18-221ENST00000582448 ATP1A1P05023 1023 aaKnown RBP10.7□□□□□ -0.7
SS18-221ENST00000582448 OR4Q2P0C623 313 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 CTAGE8P0CG41 777 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 ACO1P21399 889 aaKnown RBP10.7□□□□□ -0.7
SS18-221ENST00000582448 PAFAH1B1P43034 410 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 FMO1Q01740 532 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 MRPL58Q14197 206 aaKnown RBP10.7□□□□□ -0.7
SS18-221ENST00000582448 RPS6KA1Q15418 735 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 CLEC16AQ2KHT3 1053 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 ZNF280DQ6N043 979 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 SCARA5Q6ZMJ2 495 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 PEX26Q7Z412 305 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 DAAM2Q86T65 1068 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 CTAGE6Q86UF2 777 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 ARID3BQ8IVW6 561 aaPredicted RBP10.7□□□□□ -0.7
SS18-221ENST00000582448 CTAGE4Q8IX94 777 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 LRRC52Q8N7C0 313 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 MSANTD4Q8NCY6 345 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 APPL2Q8NEU8 664 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 SLC35G2Q8TBE7 412 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 GOLGA1Q92805 767 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 ELMO3Q96BJ8 720 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 ZNF653Q96CK0 615 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 RSPRY1Q96DX4 576 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 PLPPR2Q96GM1 343 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 ZNF560Q96MR9 790 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 MMS19Q96T76 1030 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 SELENOOQ9BVL4 669 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 XYLT2Q9H1B5 865 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 SMOC1Q9H4F8 434 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 GTSE1Q9NYZ3 720 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 RNF14Q9UBS8 474 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 AFF4Q9UHB7 1163 aaKnown RBP10.7□□□□□ -0.7
SS18-221ENST00000582448 GTF3C4Q9UKN8 822 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 SNX12Q9UMY4 172 aa10.7□□□□□ -0.7
SS18-221ENST00000582448 TIMM13Q9Y5L4 95 aaPredicted RBP10.7□□□□□ -0.7
SS18-221ENST00000582448 SPECC1L-ADORA2AF8WAN1 911 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 FANCGO15287 622 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 CHADO15335 359 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 PAEPP09466 180 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 CD19P15391 556 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 CHRNB2P17787 502 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 CYP3A5P20815 502 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 RPL9P32969 192 aaKnown RBP10.69□□□□□ -0.7
SS18-221ENST00000582448 CDR1P51861 262 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 DUSP4Q13115 394 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 DGKKQ5KSL6 1271 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 STXBP5Q5T5C0 1151 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 ALKAL1Q6UXT8 129 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 LEMD2Q8NC56 503 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 TMEM35BQ8NCS4 154 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 E2F7Q96AV8 911 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 ZNF518BQ9C0D4 1074 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 THAP2Q9H0W7 228 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 TRPV4Q9HBA0 871 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 RXFP3Q9NSD7 469 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 UVRAGQ9P2Y5 699 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 LCMT1Q9UIC8 334 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 AMFRQ9UKV5 643 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 KIAA1257Q9ULG3 409 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 ZFHX4Q86UP3 3567 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 F5P12259 2224 aa10.69□□□□□ -0.7
SS18-221ENST00000582448 ACACBO00763 2458 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 MYBPHLA2RUH7 354 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 ARNTLO00327 626 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 FOXD2O60548 495 aaPredicted RBP10.68□□□□□ -0.7
SS18-221ENST00000582448 CALB1P05937 261 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 KCNE1P15382 129 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 PMLP29590 882 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 ALDH1A3P47895 512 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 LIG3P49916 1009 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 ZNF132P52740 706 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 EPHB3P54753 998 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 HADHBP55084 474 aaKnown RBP10.68□□□□□ -0.7
SS18-221ENST00000582448 AMPD2Q01433 879 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 YWHAHQ04917 246 aaPredicted RBP10.68□□□□□ -0.7
SS18-221ENST00000582448 SEPT6Q14141 434 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 TCEAL1Q15170 157 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 SV2CQ496J9 727 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 CFAP221Q4G0U5 840 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 XKR4Q5GH76 650 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 STPG1Q5TH74 334 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 C11orf63Q6NUN7 778 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 FAM214BQ7L5A3 538 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 KBTBD6Q86V97 674 aa10.68□□□□□ -0.7
SS18-221ENST00000582448 WDR5BQ86VZ2 330 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms