RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 CCT6BQ92526 530 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 PRCCQ92733 491 aaPredicted RBP13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 N4BP2L2Q92802 583 aaPredicted RBP13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 NTAN1Q96AB6 310 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 PAIP2Q9BPZ3 127 aaKnown RBP13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 CEP41Q9BYV8 373 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 FOXP3Q9BZS1 431 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 MTIF3Q9H2K0 278 aaKnown RBP13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 NDFIP2Q9NV92 336 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SMPD4Q9NXE4 827 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 RRN3Q9NYV6 651 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 KLHL42Q9P2K6 505 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SHOC2Q9UQ13 582 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 ZDHHC11BP0C7U3 371 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 RBL1P28749 1068 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TPI1P60174 286 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SEMA3BQ13214 749 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 NOMO1Q15155 1222 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 LILRA6Q6PI73 481 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 PPIL6Q8IXY8 311 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TCEAL8Q8IYN2 117 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 NPWQ8N729 165 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 DEPDC1BQ8WUY9 529 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 WBP2Q969T9 261 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 MYEOVQ96EZ4 313 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 CELF6Q96J87 481 aaKnown RBP13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TTLL2Q9BWV7 592 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 UBE2OQ9C0C9 1292 aaKnown RBP13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 NACA2Q9H009 215 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TLR9Q9NR96 1032 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 HCFC1R1Q9NWW0 138 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 FNIP2Q9P278 1114 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 HS3ST4Q9Y661 456 aa13.03□□□□□ -0.32
CDK5RAP3-217ENST00000580287 KIAA1671Q9BY89 1806 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 RASA4BC9J798 803 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 RASA4O43374 803 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 COCHO43405 550 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 C8AP07357 584 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 DPYSQ14117 519 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 BBS9Q3SYG4 887 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TNFAIP8L3Q5GJ75 292 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 PIK3R6Q5UE93 754 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 NUGGCQ68CJ6 796 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TXNDC8Q6A555 127 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 BEND5Q7L4P6 421 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 PCGF5Q86SE9 256 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 CCDC197Q8NCU1 140 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 CPT1BQ92523 772 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SPOCK2Q92563 424 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SERPINB11Q96P15 392 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 ARHGEF38Q9NXL2 777 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 CLIC5Q9NZA1 410 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 VANGL2Q9ULK5 521 aa13.02□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TCRBV7S3A2A0A539 114 aa13.02□□□□□ -0.33
CDK5RAP3-217ENST00000580287 KCNU1A8MYU2 1149 aa13.02□□□□□ -0.33
CDK5RAP3-217ENST00000580287 CCL16O15467 120 aa13.02□□□□□ -0.33
CDK5RAP3-217ENST00000580287 CSH1P0DML2 217 aa13.02□□□□□ -0.33
CDK5RAP3-217ENST00000580287 CSH2P0DML3 217 aa13.02□□□□□ -0.33
CDK5RAP3-217ENST00000580287 SCAPQ12770 1279 aa13.02□□□□□ -0.33
CDK5RAP3-217ENST00000580287 ARTNQ5T4W7 220 aa13.02□□□□□ -0.33
CDK5RAP3-217ENST00000580287 STXBP5Q5T5C0 1151 aa13.02□□□□□ -0.33
CDK5RAP3-217ENST00000580287 FAM47EQ6ZV65 393 aa13.02□□□□□ -0.33
CDK5RAP3-217ENST00000580287 KREMEN2Q8NCW0 462 aa13.02□□□□□ -0.33
CDK5RAP3-217ENST00000580287 PYROXD1Q8WU10 500 aa13.02□□□□□ -0.33
CDK5RAP3-217ENST00000580287 CENPTQ96BT3 561 aa13.02□□□□□ -0.33
CDK5RAP3-217ENST00000580287 SLC39A13Q96H72 371 aa13.02□□□□□ -0.33
CDK5RAP3-217ENST00000580287 TTC25Q96NG3 672 aa13.02□□□□□ -0.33
CDK5RAP3-217ENST00000580287 TRPC7Q9HCX4 862 aa13.02□□□□□ -0.33
CDK5RAP3-217ENST00000580287 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.02□□□□□ -0.33
CDK5RAP3-217ENST00000580287 PLXNA4Q9HCM2 1894 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 H3BRJ5 948 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 RFXAPO00287 272 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 TRDMT1O14717 391 aaKnown RBP13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 KCNN4O15554 427 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 IRF1P10914 325 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 KRT15P19012 456 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 EPHB3P54753 998 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 ARL4CP56559 192 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 FNBP1LQ5T0N5 605 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 CIR1Q86X95 450 aaPredicted RBP13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 ARHGAP18Q8N392 663 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 TRIM62Q9BVG3 475 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 FRMD8P1Q9BZ68 369 aaPredicted RBP13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 USP29Q9HBJ7 922 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 TLR6Q9Y2C9 796 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 ZNF638Q14966 1978 aaKnown RBP13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 DCLK1O15075 740 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 ADH1AP07327 375 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 EPCAMP16422 314 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 SSTR1P30872 391 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 ZXDBP98169 803 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 CYP4F8P98187 520 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 VEPH1Q14D04 833 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 FAXCQ5TGI0 409 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 MSANTD2Q6P1R3 559 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 GAREM2Q75VX8 874 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 RELL1Q8IUW5 271 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 CCNYQ8ND76 341 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 PSMG2Q969U7 264 aa13.01□□□□□ -0.33
CDK5RAP3-217ENST00000580287 PBX4Q9BYU1 374 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms