RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 MFHAS1Q9Y4C4 1052 aa11.02□□□□□ -0.64
SS18-213ENST00000579640 ILVBLA1L0T0 632 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 CFAP69A5D8W1 941 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 ARHGAP42A6NI28 874 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 H0Y626 953 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 RIOK3O14730 519 aaKnown RBP11.02□□□□□ -0.65
SS18-213ENST00000579640 CHADO15335 359 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 ITGAVP06756 1048 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 RHOCP08134 193 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 RBP3P10745 1247 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 HOXD9P28356 352 aaPredicted RBP11.02□□□□□ -0.65
SS18-213ENST00000579640 COILP38432 576 aaPredicted RBP11.02□□□□□ -0.65
SS18-213ENST00000579640 GAD2Q05329 585 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 SLC10A2Q12908 348 aaPredicted RBP11.02□□□□□ -0.65
SS18-213ENST00000579640 CDH18Q13634 790 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 HTR4Q13639 388 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 DHCR24Q15392 516 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 OASLQ15646 514 aaKnown RBP11.02□□□□□ -0.65
SS18-213ENST00000579640 CCDC137Q6PK04 289 aaKnown RBP11.02□□□□□ -0.65
SS18-213ENST00000579640 MFN1Q8IWA4 741 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 ARHGAP12Q8IWW6 846 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 CARNMT1Q8N4J0 409 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 ATL2Q8NHH9 583 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 CCDC26Q8TAB7 109 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 ATG4AQ8WYN0 398 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 FGF14Q92915 247 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 HDAC11Q96DB2 347 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 FERMT1Q9BQL6 677 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 BBS2Q9BXC9 721 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 DDX47Q9H0S4 455 aaKnown RBP11.02□□□□□ -0.65
SS18-213ENST00000579640 MAGEH1Q9H213 219 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 NDFIP2Q9NV92 336 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 PCYOX1Q9UHG3 505 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 DNPEPQ9ULA0 475 aa11.02□□□□□ -0.65
SS18-213ENST00000579640 BCLAF3A2AJT9 711 aaKnown RBP11.01□□□□□ -0.65
SS18-213ENST00000579640 H7C0C1 242 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 HOXC11O43248 304 aaPredicted RBP11.01□□□□□ -0.65
SS18-213ENST00000579640 CYP17A1P05093 508 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 GARSP41250 739 aaKnown RBP11.01□□□□□ -0.65
SS18-213ENST00000579640 ATP5OP48047 213 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 GNA12Q03113 381 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 PPIDQ08752 370 aaKnown RBP11.01□□□□□ -0.65
SS18-213ENST00000579640 NR1H3Q13133 447 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 SLC12A1Q13621 1099 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 DHX34Q14147 1143 aaKnown RBP11.01□□□□□ -0.65
SS18-213ENST00000579640 POLD3Q15054 466 aaPredicted RBP11.01□□□□□ -0.65
SS18-213ENST00000579640 ANO4Q32M45 955 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 SLC45A4Q5BKX6 768 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 LY6G5CQ5SRR4 150 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 PTCRAQ6ISU1 281 aaPredicted RBP11.01□□□□□ -0.65
SS18-213ENST00000579640 CCDC70Q6NSX1 233 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 RHBDF2Q6PJF5 856 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 MAATS1Q7Z4T9 603 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 TMEM25Q86YD3 366 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 KLHL7Q8IXQ5 586 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 CCDC105Q8IYK2 499 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 CPA6Q8N4T0 437 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 ATPAF2Q8N5M1 289 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 MAFAQ8NHW3 353 aaPredicted RBP11.01□□□□□ -0.65
SS18-213ENST00000579640 FIBINQ8TAL6 211 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 TFB1MQ8WVM0 346 aaKnown RBP11.01□□□□□ -0.65
SS18-213ENST00000579640 SLCO2A1Q92959 643 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 CELF6Q96J87 481 aaKnown RBP11.01□□□□□ -0.65
SS18-213ENST00000579640 TSGA13Q96PP4 275 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 QKIQ96PU8 341 aaKnown RBP eCLIP11.01□□□□□ -0.651e-6■■■■■ 30.7
SS18-213ENST00000579640 KRT12Q99456 494 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 KXD1Q9BQD3 176 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 TRMT61BQ9BVS5 477 aaKnown RBP11.01□□□□□ -0.65
SS18-213ENST00000579640 SLC2A11Q9BYW1 496 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 SLC39A8Q9C0K1 460 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 NOL6Q9H6R4 1146 aaKnown RBP11.01□□□□□ -0.65
SS18-213ENST00000579640 KIAA1522Q9P206 1035 aaPredicted RBP11.01□□□□□ -0.65
SS18-213ENST00000579640 ZNF148Q9UQR1 794 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 NUMBLQ9Y6R0 609 aa11.01□□□□□ -0.65
SS18-213ENST00000579640 EFCAB8A8MWE9 144 aa11□□□□□ -0.65
SS18-213ENST00000579640 C2CD4DB7Z1M9 353 aa11□□□□□ -0.65
SS18-213ENST00000579640 RASA4BC9J798 803 aa11□□□□□ -0.65
SS18-213ENST00000579640 NEDD8-MDP1E9PL57 170 aa11□□□□□ -0.65
SS18-213ENST00000579640 DFFAO00273 331 aa11□□□□□ -0.65
SS18-213ENST00000579640 MTSS1O43312 755 aa11□□□□□ -0.65
SS18-213ENST00000579640 RASA4O43374 803 aa11□□□□□ -0.65
SS18-213ENST00000579640 ADH5P11766 374 aa11□□□□□ -0.65
SS18-213ENST00000579640 TYRP14679 529 aa11□□□□□ -0.65
SS18-213ENST00000579640 STIP1P31948 543 aaKnown RBP11□□□□□ -0.65
SS18-213ENST00000579640 SNX1Q13596 522 aa11□□□□□ -0.65
SS18-213ENST00000579640 PRKD1Q15139 912 aaPredicted RBP11□□□□□ -0.65
SS18-213ENST00000579640 GLE1Q53GS7 698 aaKnown RBP11□□□□□ -0.65
SS18-213ENST00000579640 CXorf57Q6NSI4 855 aaKnown RBP11□□□□□ -0.65
SS18-213ENST00000579640 TIGD7Q6NT04 549 aaPredicted RBP11□□□□□ -0.65
SS18-213ENST00000579640 DARS2Q6PI48 645 aaKnown RBP11□□□□□ -0.65
SS18-213ENST00000579640 SYDE1Q6ZW31 735 aaPredicted RBP11□□□□□ -0.65
SS18-213ENST00000579640 ZC3H18Q86VM9 953 aaKnown RBP11□□□□□ -0.65
SS18-213ENST00000579640 ARHGEF2Q92974 986 aaKnown RBP11□□□□□ -0.65
SS18-213ENST00000579640 FATE1Q969F0 183 aa11□□□□□ -0.65
SS18-213ENST00000579640 ASIC4Q96FT7 647 aa11□□□□□ -0.65
SS18-213ENST00000579640 CCDC114Q96M63 670 aa11□□□□□ -0.65
SS18-213ENST00000579640 XPO6Q96QU8 1125 aaKnown RBP11□□□□□ -0.65
SS18-213ENST00000579640 FAM118BQ9BPY3 351 aa11□□□□□ -0.65
SS18-213ENST00000579640 PLA2G2FQ9BZM2 168 aa11□□□□□ -0.65
SS18-213ENST00000579640 ECT2Q9H8V3 914 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms