RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CALB1P05937 261 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 DLDP09622 509 aaKnown RBP8.36□□□□□ -1.07
VPS53-214ENST00000572607 ZNF806P0C7X5 589 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 ATP1A3P13637 1013 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 BCKDHBP21953 392 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 OXTRP30559 389 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 SDC4P31431 198 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 RDXP35241 583 aaKnown RBP8.36□□□□□ -1.07
VPS53-214ENST00000572607 NNMTP40261 264 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 SH3BP2P78314 561 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 PITX1P78337 314 aaPredicted RBP8.36□□□□□ -1.07
VPS53-214ENST00000572607 FMO1Q01740 532 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 SFSWAPQ12872 951 aaKnown RBP8.36□□□□□ -1.07
VPS53-214ENST00000572607 LMAN2Q12907 356 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 ZNF177Q13360 481 aaPredicted RBP8.36□□□□□ -1.07
VPS53-214ENST00000572607 SLC12A1Q13621 1099 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 SKOR2Q2VWA4 1001 aaPredicted RBP8.36□□□□□ -1.07
VPS53-214ENST00000572607 ARL13BQ3SXY8 428 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 SLC25A52Q3SY17 297 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 FUT11Q495W5 492 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 PITRM1Q5JRX3 1037 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 KIAA1211LQ6NV74 962 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 PPP1R2P3Q6NXS1 205 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 LRRC31Q6UY01 552 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 MMS22LQ6ZRQ5 1243 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 ARMCX6Q7L4S7 300 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 ADIPOR2Q86V24 386 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 XYLT1Q86Y38 959 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 TMPRSS6Q8IU80 811 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 DHX40Q8IX18 779 aaKnown RBP8.36□□□□□ -1.07
VPS53-214ENST00000572607 OR2T3Q8NH03 318 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 CYB5D2Q8WUJ1 264 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 PIGKQ92643 395 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 SIPA1Q96FS4 1042 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 MRGPRX1Q96LB2 322 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 NPY6RQ99463 290 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 TKTL2Q9H0I9 626 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 METTL5Q9NRN9 209 aaKnown RBP8.36□□□□□ -1.07
VPS53-214ENST00000572607 ADAM22Q9P0K1 906 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 XPO7Q9UIA9 1087 aaKnown RBP8.36□□□□□ -1.07
VPS53-214ENST00000572607 NOCTQ9UK39 431 aaKnown RBP8.36□□□□□ -1.07
VPS53-214ENST00000572607 CEP295Q9C0D2 2601 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 AKAP13Q12802 2813 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 ZFYVE26Q68DK2 2539 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 IGHV1OR15-9A0A0B4J2B8 117 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.35□□□□□ -1.07
VPS53-214ENST00000572607 TM4SF5O14894 197 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 KHNYNO15037 678 aaKnown RBP8.35□□□□□ -1.07
VPS53-214ENST00000572607 PAGE1O75459 146 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 CLDN11O75508 207 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 DNTTP04053 509 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 SRPRAP08240 638 aaKnown RBP8.35□□□□□ -1.07
VPS53-214ENST00000572607 CCNYL3P0C7X3 344 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 HLA-EP13747 358 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 MMP8P22894 467 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 PRKCHP24723 683 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 PMLP29590 882 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 CD6P30203 668 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 CSKP41240 450 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 CXCR3P49682 368 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 CENPCQ03188 943 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 SULT2A1Q06520 285 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 EIF4EBP2Q13542 120 aaPredicted RBP8.35□□□□□ -1.07
VPS53-214ENST00000572607 ENPP2Q13822 863 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 AUHQ13825 339 aaKnown RBP8.35□□□□□ -1.07
VPS53-214ENST00000572607 CCDC6Q16204 474 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 ASIC2Q16515 512 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 CLEC16AQ2KHT3 1053 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 TTC31Q49AM3 519 aaPredicted RBP8.35□□□□□ -1.07
VPS53-214ENST00000572607 C2CD6Q53TS8 623 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 PPM1JQ5JR12 505 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 TMEM215Q68D42 235 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 RNF43Q68DV7 783 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 IL31Q6EBC2 164 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 FBXL22Q6P050 247 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 RABEPKQ7Z6M1 372 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 KIAA0907Q7Z7F0 614 aaPredicted RBP8.35□□□□□ -1.07
VPS53-214ENST00000572607 CACUL1Q86Y37 369 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 TMEFF1Q8IYR6 380 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 CCAR2Q8N163 923 aaKnown RBP8.35□□□□□ -1.07
VPS53-214ENST00000572607 KDM1BQ8NB78 822 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 WFDC5Q8TCV5 224 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 FOXJ1Q92949 421 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 TTC17Q96AE7 1141 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 PGAP3Q96FM1 320 aaPredicted RBP8.35□□□□□ -1.07
VPS53-214ENST00000572607 TBCBQ99426 244 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 AGPAT1Q99943 283 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 SELENOOQ9BVL4 669 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 SIK2Q9H0K1 926 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 HSD3B7Q9H2F3 369 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 PIGVQ9NUD9 493 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 EVA1BQ9NVM1 165 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 MBD1Q9UIS9 605 aaPredicted RBP8.35□□□□□ -1.07
VPS53-214ENST00000572607 VANGL2Q9ULK5 521 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 MYO6Q9UM54 1294 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 HS3ST4Q9Y661 456 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 WASF2Q9Y6W5 498 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 ATRXP46100 2492 aa8.35□□□□□ -1.07
VPS53-214ENST00000572607 A0A1W2PQC6 194 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms