RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 CEP83Q9Y592 693 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 ACACAQ13085 2346 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 DOCK9Q9BZ29 2069 aa16.25■□□□□ 0.19
CLK3-211ENST00000563297 LRRC72A6NJI9 287 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 WNT1P04628 370 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 SLC2A3P11169 496 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 PDGFRAP16234 1089 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 GOT1P17174 413 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 PON1P27169 355 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 NNMTP40261 264 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 NUMBP49757 651 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 CAMK4Q16566 473 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 EXOC3L4Q17RC7 722 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 RNF219Q5W0B1 726 aaPredicted RBP16.24■□□□□ 0.19
CLK3-211ENST00000563297 FBXL22Q6P050 247 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 TMPRSS7Q7RTY8 843 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 CIR1Q86X95 450 aaPredicted RBP16.24■□□□□ 0.19
CLK3-211ENST00000563297 ALG14Q96F25 216 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 SLC6A18Q96N87 628 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 ASNSD1Q9NWL6 643 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 DDIT4Q9NX09 232 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 PCDHGC3Q9UN70 934 aa16.24■□□□□ 0.19
CLK3-211ENST00000563297 SYNJ2BP-COX16A0A087WUM0 186 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 A0A1B0GVM2 712 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 GTPBP10A4D1E9 387 aaKnown RBP16.23■□□□□ 0.19
CLK3-211ENST00000563297 TCAF2A6NFQ2 919 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 GOLGA8CPA6NN73 597 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 WNT9AO14904 365 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 DFNA5O60443 496 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 GRAP2O75791 330 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 VAV1P15498 845 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 ABCB4P21439 1286 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 C5AR1P21730 350 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 CCR1P32246 355 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 GRK6P43250 576 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 PSMD8P48556 350 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 CCT8P50990 548 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 CCR5P51681 352 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 C21orf59P57076 290 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 SULT2A1Q06520 285 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 PRAMEF14Q5SWL7 426 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 CXorf57Q6NSI4 855 aaKnown RBP16.23■□□□□ 0.19
CLK3-211ENST00000563297 SND1Q7KZF4 910 aaKnown RBP eCLIP16.23■□□□□ 0.19
CLK3-211ENST00000563297 PASD1Q8IV76 773 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 FRS2Q8WU20 508 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 RNF34Q969K3 372 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 ACE2Q9BYF1 805 aaPredicted RBP16.23■□□□□ 0.19
CLK3-211ENST00000563297 FAM204AQ9H8W3 233 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 SIX2Q9NPC8 291 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 COX16Q9P0S2 106 aa16.23■□□□□ 0.19
CLK3-211ENST00000563297 AJAP1Q9UKB5 411 aaPredicted RBP16.23■□□□□ 0.19
CLK3-211ENST00000563297 TP53BP1Q12888 1972 aaPredicted RBP16.23■□□□□ 0.19
CLK3-211ENST00000563297 URB1O60287 2271 aaKnown RBP16.22■□□□□ 0.19
CLK3-211ENST00000563297 APC2O95996 2303 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 A0A1B0GTQ1 180 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 A0A1W2PR77 199 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 FOXN3O00409 490 aaPredicted RBP16.22■□□□□ 0.19
CLK3-211ENST00000563297 TNFSF14O43557 240 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 HSF2BPO75031 334 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 ADH1BP00325 375 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 IL1BP01584 269 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 DRD3P35462 400 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 CLCN1P35523 988 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 VASPP50552 380 aaPredicted RBP16.22■□□□□ 0.19
CLK3-211ENST00000563297 OXCT1P55809 520 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 IL9RQ01113 521 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 PTK2Q05397 1052 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 AUHQ13825 339 aaKnown RBP16.22■□□□□ 0.19
CLK3-211ENST00000563297 ELAVL3Q14576 367 aaKnown RBP16.22■□□□□ 0.19
CLK3-211ENST00000563297 RABGAP1LQ5R372 815 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 TTC39BQ5VTQ0 682 aaPredicted RBP16.22■□□□□ 0.19
CLK3-211ENST00000563297 OR6B2Q6IFH4 312 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 LRSAM1Q6UWE0 723 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 C11orf57Q6ZUT1 292 aaPredicted RBP16.22■□□□□ 0.19
CLK3-211ENST00000563297 FAM183BPQ6ZVS7 135 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 OR52K2Q8NGK3 314 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 OR14C36Q8NHC7 312 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 FEM1AQ9BSK4 669 aa16.22■□□□□ 0.19
CLK3-211ENST00000563297 ARID1BQ8NFD5 2236 aaPredicted RBP16.22■□□□□ 0.19
CLK3-211ENST00000563297 LAMA5O15230 3695 aa16.21■□□□□ 0.19
CLK3-211ENST00000563297 NYNRINQ9P2P1 1898 aaKnown RBP16.21■□□□□ 0.19
CLK3-211ENST00000563297 ERBB2P04626 1255 aa16.21■□□□□ 0.19
CLK3-211ENST00000563297 CD38P28907 300 aa16.21■□□□□ 0.19
CLK3-211ENST00000563297 ADPRHP54922 357 aa16.21■□□□□ 0.19
CLK3-211ENST00000563297 SLC6A3Q01959 620 aa16.21■□□□□ 0.19
CLK3-211ENST00000563297 NME3Q13232 169 aa16.21■□□□□ 0.19
CLK3-211ENST00000563297 SMYD5Q6GMV2 418 aa16.21■□□□□ 0.19
CLK3-211ENST00000563297 OLFML1Q6UWY5 402 aa16.21■□□□□ 0.19
CLK3-211ENST00000563297 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.21■□□□□ 0.19
CLK3-211ENST00000563297 MARCH9Q86YJ5 346 aa16.21■□□□□ 0.19
CLK3-211ENST00000563297 C1orf131Q8NDD1 294 aaKnown RBP16.21■□□□□ 0.19
CLK3-211ENST00000563297 SKA1Q96BD8 255 aa16.21■□□□□ 0.19
CLK3-211ENST00000563297 RPRD1AQ96P16 312 aaPredicted RBP16.21■□□□□ 0.19
CLK3-211ENST00000563297 SPAG5Q96R06 1193 aa16.21■□□□□ 0.19
CLK3-211ENST00000563297 PPP1R9BQ96SB3 815 aa16.21■□□□□ 0.19
CLK3-211ENST00000563297 ELF4Q99607 663 aaPredicted RBP16.21■□□□□ 0.19
CLK3-211ENST00000563297 CCDC86Q9H6F5 360 aaKnown RBP16.21■□□□□ 0.19
CLK3-211ENST00000563297 DNAJC12Q9UKB3 198 aa16.21■□□□□ 0.19
CLK3-211ENST00000563297 VANGL2Q9ULK5 521 aa16.21■□□□□ 0.19
CLK3-211ENST00000563297 OR51B4Q9Y5P0 310 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms