RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 GABRB3P28472 473 aa13.6□□□□□ -0.23
CLK3-206ENST00000562078 ZBTB17Q13105 803 aa13.6□□□□□ -0.23
CLK3-206ENST00000562078 ITGADQ13349 1161 aa13.6□□□□□ -0.23
CLK3-206ENST00000562078 NRF1Q16656 503 aa13.6□□□□□ -0.23
CLK3-206ENST00000562078 MAMDC4Q6UXC1 1216 aa13.6□□□□□ -0.23
CLK3-206ENST00000562078 GPR141Q7Z602 305 aa13.6□□□□□ -0.23
CLK3-206ENST00000562078 CHERPQ8IWX8 916 aaKnown RBP13.6□□□□□ -0.23
CLK3-206ENST00000562078 PCYOX1LQ8NBM8 494 aa13.6□□□□□ -0.23
CLK3-206ENST00000562078 E2F7Q96AV8 911 aa13.6□□□□□ -0.23
CLK3-206ENST00000562078 SMARCAD1Q9H4L7 1026 aa13.6□□□□□ -0.23
CLK3-206ENST00000562078 EPS15L1Q9UBC2 864 aa13.6□□□□□ -0.23
CLK3-206ENST00000562078 CARD8Q9Y2G2 431 aa13.6□□□□□ -0.23
CLK3-206ENST00000562078 N6AMT1Q9Y5N5 214 aa13.6□□□□□ -0.23
CLK3-206ENST00000562078 SQORQ9Y6N5 450 aa13.6□□□□□ -0.23
CLK3-206ENST00000562078 TMEM114B3SHH9 223 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 TNPO2O14787 897 aaKnown RBP13.59□□□□□ -0.23
CLK3-206ENST00000562078 B4GALT5O43286 388 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 SNAI1O95863 264 aaPredicted RBP13.59□□□□□ -0.23
CLK3-206ENST00000562078 GNA15P30679 374 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 MSX2P35548 267 aaPredicted RBP13.59□□□□□ -0.23
CLK3-206ENST00000562078 ADCYAP1R1P41586 468 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 NSUN2Q08J23 767 aaKnown RBP eCLIP13.59□□□□□ -0.23
CLK3-206ENST00000562078 FAAP100Q0VG06 881 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 MAP2K5Q13163 448 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 PTK7Q13308 1070 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 TEX44Q53QW1 395 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 FGD3Q5JSP0 725 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 RNASEH2BQ5TBB1 312 aaKnown RBP13.59□□□□□ -0.23
CLK3-206ENST00000562078 KAZNQ674X7 775 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 TAPT1Q6NXT6 567 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 ZCCHC23Q6ZST2 131 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 FRMD7Q6ZUT3 714 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 SH2D5Q6ZV89 423 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 CDR2LQ86X02 465 aaPredicted RBP13.59□□□□□ -0.23
CLK3-206ENST00000562078 ZNF677Q86XU0 584 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 CRLF3Q8IUI8 442 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 MCOLN2Q8IZK6 566 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 APOL6Q9BWW8 343 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 IMPG2Q9BZV3 1241 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 ACSS3Q9H6R3 686 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 SCINQ9Y6U3 715 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 INO80B-WBP1J3KQ70 363 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 OGTO15294 1046 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 AOC2O75106 756 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 S100BP04271 92 aaPredicted RBP13.59□□□□□ -0.23
CLK3-206ENST00000562078 CD58P19256 250 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 EPHA3P29320 983 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 NSFP46459 744 aaKnown RBP13.59□□□□□ -0.23
CLK3-206ENST00000562078 ATXN3P54252 364 aaPredicted RBP13.59□□□□□ -0.23
CLK3-206ENST00000562078 NOGQ13253 232 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 TUBB3Q13509 450 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 E2F2Q14209 437 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 HIF1AQ16665 826 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 MORN1Q5T089 497 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 FNBP1LQ5T0N5 605 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 IL23RQ5VWK5 629 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 PPP2R2DQ66LE6 453 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 EFCAB12Q6NXP0 572 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 WDR49Q8IV35 697 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 SIX5Q8N196 739 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 TAB3Q8N5C8 712 aaPredicted RBP13.59□□□□□ -0.23
CLK3-206ENST00000562078 SLC15A4Q8N697 577 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 ANKK1Q8NFD2 765 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 TFB1MQ8WVM0 346 aaKnown RBP13.59□□□□□ -0.23
CLK3-206ENST00000562078 TANKQ92844 425 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 CTRCQ99895 268 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 PKP2Q99959 881 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 INO80BQ9C086 356 aaPredicted RBP13.59□□□□□ -0.23
CLK3-206ENST00000562078 CDH19Q9H159 772 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 C2orf40Q9H1Z8 148 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 HIPK3Q9H422 1215 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 KLHL11Q9NVR0 708 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 PRELID1Q9Y255 219 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 SNX9Q9Y5X1 595 aa13.59□□□□□ -0.23
CLK3-206ENST00000562078 H3BNH8 94 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 TNFRSF10AO00220 468 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 CA12O43570 354 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 CYP2B6P20813 491 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 NR4A1P22736 598 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 TBXAS1P24557 533 aaPredicted RBP13.58□□□□□ -0.23
CLK3-206ENST00000562078 SLC26A2P50443 739 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 OSTNP61366 133 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 ARHGAP1Q07960 439 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 MORF4L2Q15014 288 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 KLHL38Q2WGJ6 581 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 DEFB115Q30KQ5 88 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 PLEKHA7Q6IQ23 1121 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 ADCY4Q8NFM4 1077 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 MAELQ96JY0 434 aaKnown RBP13.58□□□□□ -0.23
CLK3-206ENST00000562078 CEP295NLQ96MC4 621 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 GCOM2Q9BZD3 368 aaPredicted RBP13.58□□□□□ -0.23
CLK3-206ENST00000562078 ABHD16BQ9H3Z7 469 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 RNPEPQ9H4A4 650 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 PARVBQ9HBI1 364 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 KLHL3Q9UH77 587 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 GNPTGQ9UJJ9 305 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 CDH7Q9ULB5 785 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 RABL2BQ9UNT1 228 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 ERGIC3Q9Y282 383 aa13.58□□□□□ -0.23
CLK3-206ENST00000562078 TTLL3Q9Y4R7 772 aa13.58□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms