RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 VCPIP1Q96JH7 1222 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 GPR174Q9BXC1 333 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 UBXN6Q9BZV1 441 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 CLEC4EQ9ULY5 219 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 PCDHGC3Q9UN70 934 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 CEP83Q9Y592 693 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 TMEM131Q92545 1883 aa14.52□□□□□ -0.08
LDLR-213ENST00000560502 MEI4A8MW99 385 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 MTA2O94776 668 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 CYP1A1P04798 512 aaPredicted RBP14.52□□□□□ -0.09
LDLR-213ENST00000560502 FTH1P19P0C7X4 201 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 PRLRP16471 622 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 PRKCHP24723 683 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 TPMTP51580 245 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 BNC1Q01954 994 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 CENPCQ03188 943 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 ZNF234Q14588 700 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 STILQ15468 1287 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 TMEM215Q68D42 235 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 ARHGAP17Q68EM7 881 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 ACAD10Q6JQN1 1059 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 BHLHA9Q7RTU4 235 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 PIGZQ86VD9 579 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 TMPRSS6Q8IU80 811 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 ZCCHC9Q8N567 271 aaKnown RBP14.52□□□□□ -0.09
LDLR-213ENST00000560502 SLC4A11Q8NBS3 891 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 C1orf216Q8TAB5 229 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 UCMAQ8WVF2 138 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 SLC2A11Q9BYW1 496 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 IRX2Q9BZI1 471 aaPredicted RBP14.52□□□□□ -0.09
LDLR-213ENST00000560502 ELOVL2Q9NXB9 296 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 MARCH2Q9P0N8 246 aa14.52□□□□□ -0.09
LDLR-213ENST00000560502 TP53BP1Q12888 1972 aaPredicted RBP14.51□□□□□ -0.09
LDLR-213ENST00000560502 METTL12A8MUP2 240 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 THAP12O43422 761 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 FTLP02792 175 aaPredicted RBP14.51□□□□□ -0.09
LDLR-213ENST00000560502 HMBSP08397 361 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 ZNF883P0CG24 379 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 UNGP13051 313 aaPredicted RBP14.51□□□□□ -0.09
LDLR-213ENST00000560502 OXTRP30559 389 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 CDH5P33151 784 aaPredicted RBP14.51□□□□□ -0.09
LDLR-213ENST00000560502 RAD23BP54727 409 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 ZNF394Q53GI3 561 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 DCAF12L1Q5VU92 463 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 TAF3Q5VWG9 929 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 PAPD7Q5XG87 772 aaKnown RBP14.51□□□□□ -0.09
LDLR-213ENST00000560502 DENND1CQ8IV53 801 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 ARHGAP18Q8N392 663 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 BAHD1Q8TBE0 780 aaPredicted RBP14.51□□□□□ -0.09
LDLR-213ENST00000560502 SIPA1Q96FS4 1042 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 HEXIM2Q96MH2 286 aaKnown RBP14.51□□□□□ -0.09
LDLR-213ENST00000560502 PACSIN1Q9BY11 444 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 PDCL3Q9H2J4 239 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 UVRAGQ9P2Y5 699 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 LCMT1Q9UIC8 334 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 PCOLCE2Q9UKZ9 415 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 LHX6Q9UPM6 363 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 CAPN6Q9Y6Q1 641 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 DUSP10Q9Y6W6 482 aa14.51□□□□□ -0.09
LDLR-213ENST00000560502 FREM2Q5SZK8 3169 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 SYNCRIPO60506 623 aaKnown RBP14.5□□□□□ -0.09
LDLR-213ENST00000560502 URI1O94763 535 aaPredicted RBP14.5□□□□□ -0.09
LDLR-213ENST00000560502 MOCS3O95396 460 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 CYBBP04839 570 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 HOXD9P28356 352 aaPredicted RBP14.5□□□□□ -0.09
LDLR-213ENST00000560502 NSFP46459 744 aaKnown RBP14.5□□□□□ -0.09
LDLR-213ENST00000560502 NAP1L1P55209 391 aaKnown RBP14.5□□□□□ -0.09
LDLR-213ENST00000560502 YWHAGP61981 247 aaKnown RBP eCLIP14.5□□□□□ -0.09
LDLR-213ENST00000560502 TUBB4BP68371 445 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 C1QBPQ07021 282 aaKnown RBP14.5□□□□□ -0.09
LDLR-213ENST00000560502 SCAPQ12770 1279 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 COL9A2Q14055 689 aaPredicted RBP14.5□□□□□ -0.09
LDLR-213ENST00000560502 E2F5Q15329 346 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 TRIP4Q15650 581 aaPredicted RBP14.5□□□□□ -0.09
LDLR-213ENST00000560502 WHAMMP3Q1A5X7 153 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 PM20D1Q6GTS8 502 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 PHF13Q86YI8 300 aaPredicted RBP14.5□□□□□ -0.09
LDLR-213ENST00000560502 ANKRD52Q8NB46 1076 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 TMEM35BQ8NCS4 154 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 MSANTD4Q8NCY6 345 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 MYRIPQ8NFW9 859 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 ZNF606Q8WXB4 792 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 SORCS1Q8WY21 1168 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 PRCCQ92733 491 aaPredicted RBP14.5□□□□□ -0.09
LDLR-213ENST00000560502 PLD4Q96BZ4 506 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 TMEM176AQ96HP8 235 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 PCDHB18PQ96TA0 734 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 PCED1AQ9H1Q7 454 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 LHX5Q9H2C1 402 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 IL21RQ9HBE5 538 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 STRIP2Q9ULQ0 834 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 PCDHB9Q9Y5E1 797 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 MRFAP1Q9Y605 127 aa14.5□□□□□ -0.09
LDLR-213ENST00000560502 SLC12A8A0AV02 714 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 FANCGO15287 622 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 BCAT2O15382 392 aaPredicted RBP14.49□□□□□ -0.09
LDLR-213ENST00000560502 DKK1O94907 266 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 CER1O95813 267 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 CYP1A2P05177 515 aa14.49□□□□□ -0.09
LDLR-213ENST00000560502 VDRP11473 427 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms