RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 FBXO28Q9NVF7 368 aa3.04□□□□□ -1.92
SPG11-222ENST00000560435 UBE2J1Q9Y385 318 aaPredicted RBP3.04□□□□□ -1.92
SPG11-222ENST00000560435 TRBV5-7A0A0A0MS05 114 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 GXYLT2A0PJZ3 443 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 KCNJ18B7U540 433 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 ALDH1L1O75891 902 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 TBX6O95947 436 aaPredicted RBP3.03□□□□□ -1.92
SPG11-222ENST00000560435 SHC2P98077 582 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 BNC1Q01954 994 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 P3H1Q32P28 736 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 PLEKHA7Q6IQ23 1121 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 WDR93Q6P2C0 686 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 USP17L6PQ6QN14 398 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 KRT27Q7Z3Y8 459 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 MYPOPQ86VE0 399 aaPredicted RBP3.03□□□□□ -1.92
SPG11-222ENST00000560435 EXOC3L1Q86VI1 746 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 NPIPB3Q92617 1050 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 ADGRG7Q96K78 797 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 STRBPQ96SI9 672 aaKnown RBP3.03□□□□□ -1.92
SPG11-222ENST00000560435 GFRA4Q9GZZ7 299 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 KLHL31Q9H511 634 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 KCNK9Q9NPC2 374 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 C1orf112Q9NSG2 853 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 RAI2Q9Y5P3 530 aa3.03□□□□□ -1.92
SPG11-222ENST00000560435 IGLV5-52A0A0A0MRZ9 124 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 STMND1H3BQB6 276 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 THAP12O43422 761 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 MGEA5O60502 916 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 IGFBP2P18065 325 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 CHRNA5P30532 468 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 HOXC13P31276 330 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 KRT2P35908 639 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 STAT1P42224 750 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 ERVK11-1P61568 191 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 ARL16Q0P5N6 197 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 TROAPQ12815 778 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 RRAGBQ5VZM2 374 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 ERAP2Q6P179 960 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 AAGABQ6PD74 315 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 MDGA2Q7Z553 956 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 IGFN1Q86VF2 1251 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 NAGSQ8N159 534 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 WDSUB1Q8N9V3 476 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 POC1AQ8NBT0 407 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 ZNF485Q8NCK3 441 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 IP6K1Q92551 441 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 ADAD1Q96M93 576 aaKnown RBP3.02□□□□□ -1.93
SPG11-222ENST00000560435 IL17FQ96PD4 163 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 PGLYRP2Q96PD5 576 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 CDH19Q9H159 772 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 GAREM1Q9H706 876 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 ZNF304Q9HCX3 659 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 GAB2Q9UQC2 676 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 PCDHAC2Q9Y5I4 1007 aa3.02□□□□□ -1.93
SPG11-222ENST00000560435 A0A1B0GU03 582 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 LINC01553A4QN01 128 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 A6NNZ2 444 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 CLCA1A8K7I4 914 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 F8W8V4 182 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 GOLIM4O00461 696 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 KIF3BO15066 747 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 LDB2O43679 373 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 ZG16O60844 167 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 ALDOCP09972 364 aaKnown RBP3.01□□□□□ -1.93
SPG11-222ENST00000560435 CFC1BP0CG36 223 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 CFC1P0CG37 223 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 AMD1P17707 334 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 RPL17P18621 184 aaKnown RBP3.01□□□□□ -1.93
SPG11-222ENST00000560435 SNTA1Q13424 505 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 TTF1Q15361 905 aaPredicted RBP3.01□□□□□ -1.93
SPG11-222ENST00000560435 ZNF284Q2VY69 593 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 EFHC1Q5JVL4 640 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 TMEM71Q6P5X7 295 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 KRTAP5-2Q701N4 177 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 CCDC28AQ8IWP9 274 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 DPP10Q8N608 796 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 IQCDQ96DY2 449 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 FAR2Q96K12 515 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 ADAM18Q9Y3Q7 739 aa3.01□□□□□ -1.93
SPG11-222ENST00000560435 SAA2-SAA4A0A096LPE2 208 aa3□□□□□ -1.93
SPG11-222ENST00000560435 IGKV3D-20A0A0C4DH25 116 aa3□□□□□ -1.93
SPG11-222ENST00000560435 AREL1O15033 823 aa3□□□□□ -1.93
SPG11-222ENST00000560435 NPC1O15118 1278 aa3□□□□□ -1.93
SPG11-222ENST00000560435 APOHP02749 345 aaPredicted RBP3□□□□□ -1.93
SPG11-222ENST00000560435 U2AF1L5P0DN76 240 aaPredicted RBP3□□□□□ -1.93
SPG11-222ENST00000560435 NAGAP17050 411 aa3□□□□□ -1.93
SPG11-222ENST00000560435 AVPR1AP37288 418 aa3□□□□□ -1.93
SPG11-222ENST00000560435 RAB27AP51159 221 aa3□□□□□ -1.93
SPG11-222ENST00000560435 U2AF1Q01081 240 aaKnown RBP eCLIP3□□□□□ -1.93
SPG11-222ENST00000560435 DMP1Q13316 513 aaPredicted RBP3□□□□□ -1.93
SPG11-222ENST00000560435 CXorf57Q6NSI4 855 aaKnown RBP3□□□□□ -1.93
SPG11-222ENST00000560435 DARS2Q6PI48 645 aaKnown RBP3□□□□□ -1.93
SPG11-222ENST00000560435 KIAA0408Q6ZU52 694 aa3□□□□□ -1.93
SPG11-222ENST00000560435 C9orf139Q6ZV77 190 aa3□□□□□ -1.93
SPG11-222ENST00000560435 DGLUCYQ7Z3D6 616 aa3□□□□□ -1.93
SPG11-222ENST00000560435 CCDC25Q86WR0 208 aa3□□□□□ -1.93
SPG11-222ENST00000560435 NEXN-AS1Q8NBZ9 246 aa3□□□□□ -1.93
SPG11-222ENST00000560435 SPATA20Q8TB22 786 aa3□□□□□ -1.93
SPG11-222ENST00000560435 ZCRB1Q8TBF4 217 aaKnown RBP3□□□□□ -1.93
SPG11-222ENST00000560435 GRAMD1AQ96CP6 724 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms