RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 C12orf65Q9H3J6 166 aaKnown RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 DCLRE1BQ9H816 532 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 KCNK13Q9HB14 408 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 XPNPEP3Q9NQH7 507 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 BATF3Q9NR55 127 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 PIGVQ9NUD9 493 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 SYBUQ9NX95 663 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 BFARQ9NZS9 450 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 CPA4Q9UI42 421 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 HBS1LQ9Y450 684 aaKnown RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 MFHAS1Q9Y4C4 1052 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 CDY2AQ9Y6F7 541 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 COL4A4P53420 1690 aaPredicted RBP7.44□□□□□ -1.22
VPS13C-206ENST00000558338 SYNJ2BP-COX16A0A087WUM0 186 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 A8MUI8 341 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 TPP1O14773 563 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 GPR182O15218 404 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 HOXA2O43364 376 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 UGT1A9O60656 530 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 PEX11AO75192 247 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 DUSP11O75319 330 aaKnown RBP7.44□□□□□ -1.22
VPS13C-206ENST00000558338 SERPINE1P05121 402 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 MPOP05164 745 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 ITGA2BP08514 1039 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 SRGAP2BP0DMP2 458 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 MYL4P12829 197 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 PTPN3P26045 913 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 HSD3B2P26439 372 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 MAPK1P28482 360 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 ELF1P32519 619 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 SPRP35270 261 aaPredicted RBP7.44□□□□□ -1.22
VPS13C-206ENST00000558338 SOX11P35716 441 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 NPY2RP49146 381 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 CSE1LP55060 971 aaKnown RBP7.44□□□□□ -1.22
VPS13C-206ENST00000558338 PDE1BQ01064 536 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 GALNT2Q10471 571 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 TAF1CQ15572 869 aaPredicted RBP7.44□□□□□ -1.22
VPS13C-206ENST00000558338 MAPRE1Q15691 268 aaKnown RBP7.44□□□□□ -1.22
VPS13C-206ENST00000558338 DNAL1Q4LDG9 190 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 C6orf163Q5TEZ5 329 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 LINC00523Q86TU6 105 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 ARID3BQ8IVW6 561 aaPredicted RBP7.44□□□□□ -1.22
VPS13C-206ENST00000558338 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.44□□□□□ -1.22
VPS13C-206ENST00000558338 ARNTL2Q8WYA1 636 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 MYCBPQ99417 103 aaPredicted RBP7.44□□□□□ -1.22
VPS13C-206ENST00000558338 TGIF2Q9GZN2 237 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 UGT1A7Q9HAW7 530 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 UGT1A10Q9HAW8 530 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 UGT1A8Q9HAW9 530 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 SPC25Q9HBM1 224 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 WDR6Q9NNW5 1121 aaKnown RBP7.44□□□□□ -1.22
VPS13C-206ENST00000558338 CASS4Q9NQ75 786 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 CRTAC1Q9NQ79 661 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 DDIT4Q9NX09 232 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 FLRT1Q9NZU1 646 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 COX16Q9P0S2 106 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 VANGL2Q9ULK5 521 aa7.44□□□□□ -1.22
VPS13C-206ENST00000558338 TRIP12Q14669 1992 aaPredicted RBP7.44□□□□□ -1.22
VPS13C-206ENST00000558338 FAM237BA0A1B0GVD1 139 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 HMX2A2RU54 273 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 NRP1O14786 923 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 TIMM44O43615 452 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 LZTS3O60299 673 aaPredicted RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 PLIN3O60664 434 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 BEST1O76090 585 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 APOA4P06727 396 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 SERPINA6P08185 405 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 RARBP10826 455 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 SKIP12755 728 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 NCAM1P13591 858 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 DNAJA1P31689 397 aaKnown RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 MLH1P40692 756 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 GRIA1P42261 906 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 MAGEA12P43365 314 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 CXCR3P49682 368 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 BEX3Q00994 111 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 FASTKD1Q53R41 847 aaKnown RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 CMPK2Q5EBM0 449 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 SYPL2Q5VXT5 272 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 ARMC3Q5W041 872 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 NAPEPLDQ6IQ20 393 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 TLDC1Q6P9B6 456 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 DCLRE1AQ6PJP8 1040 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 THSD4Q6ZMP0 1018 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 LCA5Q86VQ0 697 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 TMPRSS6Q8IU80 811 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 LRRN4Q8WUT4 740 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 NSMCE1Q8WV22 266 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 N4BP2L2Q92802 583 aaPredicted RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 LENG1Q96BZ8 264 aaPredicted RBP7.43□□□□□ -1.22
VPS13C-206ENST00000558338 PCED1BQ96HM7 432 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 UROC1Q96N76 676 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 NUDCD1Q96RS6 583 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 RBBP8Q99708 897 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 SMOQ99835 787 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 MECRQ9BV79 373 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 IL22Q9GZX6 179 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 OSBPL2Q9H1P3 480 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 CCSER2Q9H7U1 834 aa7.43□□□□□ -1.22
VPS13C-206ENST00000558338 CSNK1G1Q9HCP0 422 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms