RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	AZIN2	Q96A70	460 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ULK4	Q96C45	1275 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZFYVE19	Q96K21	471 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	SPATA17	Q96L03	361 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	C7orf26	Q96N11	449 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	SMAD5	Q99717	465 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	C1orf50	Q9BV19	199 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	TXLNGY	Q9BZA5	131 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	GLIS2	Q9BZE0	524 aa	Predicted RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	UBE2O	Q9C0C9	1292 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	NDEL1	Q9GZM8	345 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	WDCP	Q9H6R7	721 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ELP3	Q9H9T3	547 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	CLK4	Q9HAZ1	481 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	TMX2	Q9Y320	296 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	SH3GLB1	Q9Y371	365 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	MYH13	Q9UKX3	1938 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	RGSL1	A5PLK6	1076 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	TP73	O15350	636 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	TRIM13	O60858	407 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	TBX10	O75333	385 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	TGDS	O95455	350 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF682	O95780	498 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	HNRNPL	P14866	589 aa	Known RBP eCLIP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	GP5	P40197	560 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ADIG	Q0VDE8	80 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF235	Q14590	738 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	SV2C	Q496J9	727 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZRANB3	Q5FWF4	1079 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	IER5	Q5VY09	327 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ARC	Q7LC44	396 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	SPATA2L	Q8IUW3	424 aa	Predicted RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	FBXO16	Q8IX29	292 aa	Predicted RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	CERS5	Q8N5B7	392 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	OR6J1	Q8NGC5	347 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	RP9	Q8TA86	221 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	BLOC1S5	Q8TDH9	187 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	DLG3	Q92796	817 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF560	Q96MR9	790 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	SNTG2	Q9NY99	539 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	PDZK1P1	A8MUH7	402 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	OGT	O15294	1046 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	PGK2	P07205	417 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	LINC00032	P0C843	101 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	GOT1	P17174	413 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	ABL2	P42684	1182 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	CLK1	P49759	484 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	DLG1	Q12959	904 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF460	Q14592	562 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	UGP2	Q16851	508 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	DCAF4L1	Q3SXM0	396 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	NADK2	Q4G0N4	442 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	CDCA2	Q69YH5	1023 aa	Predicted RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	PRMT9	Q6P2P2	845 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	GALNT18	Q6P9A2	607 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	TDRP	Q86YL5	185 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	HERC6	Q8IVU3	1022 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	PQLC1	Q8N2U9	271 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF276	Q8N554	614 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	GLIS1	Q8NBF1	620 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	HSPBAP1	Q96EW2	488 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	CCDC106	Q9BWC9	280 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	ADAM7	Q9H2U9	754 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	CACYBP	Q9HB71	228 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	FANCE	Q9HB96	536 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	CACNA2D2	Q9NY47	1150 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	GGA3	Q9NZ52	723 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	BLOC1S6	Q9UL45	172 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	TTLL13P	A6NNM8	815 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005		H3BSA7	217 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	PSMD11	O00231	422 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	VNN1	O95497	513 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	TOP3B	O95985	862 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	C4BPA	P04003	597 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	CYP1A1	P04798	512 aa	Predicted RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	GSN	P06396	782 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	HSMCR30	P0CW71	290 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	TSHR	P16473	764 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	ALOX12	P18054	663 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	HLA-DPA1	P20036	260 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF143	P52747	638 aa	Predicted RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	GEM	P55040	296 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	HPCA	P84074	193 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	ADGRE1	Q14246	886 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	CARTPT	Q16568	116 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	SH3PXD2A	Q5TCZ1	1133 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	RSBN1	Q5VWQ0	802 aa	Predicted RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	TMC5	Q6UXY8	1006 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	TTC39C	Q8N584	583 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	SHCBP1	Q8NEM2	672 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	PPP1R13L	Q8WUF5	828 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	FAM151A	Q8WW52	585 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	C9orf16	Q9BUW7	83 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	THUMPD3	Q9BV44	507 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	SNRNP25	Q9BV90	132 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	OSBPL11	Q9BXB4	747 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	ASPSCR1	Q9BZE9	553 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	IL22	Q9GZX6	179 aa		5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	SSU72	Q9NP77	194 aa	Known RBP	5.07	□□□□□ -1.6
SYNE2-223	ENST00000557005	MYOZ2	Q9NPC6	264 aa		5.07	□□□□□ -1.6

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