RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 GIPC2Q8TF65 315 aa9.13□□□□□ -0.95
TDP1-210ENST00000554976 DEPDC1BQ8WUY9 529 aa9.13□□□□□ -0.95
TDP1-210ENST00000554976 IGSF8Q969P0 613 aa9.13□□□□□ -0.95
TDP1-210ENST00000554976 BTN2A3PQ96KV6 586 aa9.13□□□□□ -0.95
TDP1-210ENST00000554976 TEKT5Q96M29 485 aa9.13□□□□□ -0.95
TDP1-210ENST00000554976 EBNA1BP2Q99848 306 aaKnown RBP9.13□□□□□ -0.95
TDP1-210ENST00000554976 SSU72Q9NP77 194 aaKnown RBP9.13□□□□□ -0.95
TDP1-210ENST00000554976 MAFFQ9ULX9 164 aa9.13□□□□□ -0.95
TDP1-210ENST00000554976 KIF26AQ9ULI4 1882 aaPredicted RBP9.12□□□□□ -0.95
TDP1-210ENST00000554976 ZNF840PA6NDX5 716 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 FAM159BA6NKW6 160 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 SMIM23A6NLE4 172 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 GFRA2O00451 464 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 TYROBPO43914 113 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 GREM1O60565 184 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 SPAG6O75602 509 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 AP2A1O95782 977 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 APRTP07741 180 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 SLC2A3P11169 496 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 CHN1P15882 459 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 ARPP19P56211 112 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 C1QTNF8P60827 252 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 NIPAL4Q0D2K0 466 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 FRG1Q14331 258 aaKnown RBP9.12□□□□□ -0.95
TDP1-210ENST00000554976 ZSCAN26Q16670 478 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 BBS9Q3SYG4 887 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 FAM133BQ5BKY9 247 aaKnown RBP9.12□□□□□ -0.95
TDP1-210ENST00000554976 C3orf62Q6ZUJ4 267 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 PDZD4Q76G19 769 aaPredicted RBP9.12□□□□□ -0.95
TDP1-210ENST00000554976 LZTR1Q8N653 840 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 ARFGAP2Q8N6H7 521 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 RNF217Q8TC41 542 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 SLC44A1Q8WWI5 657 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 ARHGEF2Q92974 986 aaKnown RBP9.12□□□□□ -0.95
TDP1-210ENST00000554976 ZNF317Q96PQ6 595 aaPredicted RBP9.12□□□□□ -0.95
TDP1-210ENST00000554976 VAT1Q99536 393 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 TRIM56Q9BRZ2 755 aaKnown RBP9.12□□□□□ -0.95
TDP1-210ENST00000554976 MCMBPQ9BTE3 642 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 EPN3Q9H201 632 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 XAB2Q9HCS7 855 aaKnown RBP9.12□□□□□ -0.95
TDP1-210ENST00000554976 STOML2Q9UJZ1 356 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 HBS1LQ9Y450 684 aaKnown RBP9.12□□□□□ -0.95
TDP1-210ENST00000554976 YIPF1Q9Y548 306 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 EXOC1LA0A1B0GW35 172 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 TLDC2A0PJX2 215 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 H3BNC9 293 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 KCNK1O00180 336 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 PRPF4O43172 522 aaKnown RBP eCLIP9.12□□□□□ -0.95
TDP1-210ENST00000554976 MTSS1O43312 755 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 OLFM2O95897 454 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 IVLP07476 585 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 ACRP10323 421 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 RHOQP17081 205 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 MX2P20592 715 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 SLC6A4P31645 630 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 ADRA1AP35348 466 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 MAGEA9P43362 315 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 LBX1P52954 281 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 EFEMP1Q12805 493 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 MTM1Q13496 603 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 ALFQ53S48 1182 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 ACBD5Q5T8D3 534 aaPredicted RBP9.12□□□□□ -0.95
TDP1-210ENST00000554976 TCEAL8Q8IYN2 117 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 CELF6Q96J87 481 aaKnown RBP9.12□□□□□ -0.95
TDP1-210ENST00000554976 LRRC3Q9BY71 257 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 STMN4Q9H169 189 aaPredicted RBP9.12□□□□□ -0.95
TDP1-210ENST00000554976 CENPHQ9H3R5 247 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 CATSPERBQ9H7T0 1116 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 PDFQ9HBH1 243 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 TRHDEQ9UKU6 1024 aa9.12□□□□□ -0.95
TDP1-210ENST00000554976 RRP15Q9Y3B9 282 aaKnown RBP9.12□□□□□ -0.95
TDP1-210ENST00000554976 NUP210Q8TEM1 1887 aaPredicted RBP9.11□□□□□ -0.95
TDP1-210ENST00000554976 SCN8AQ9UQD0 1980 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 HMX2A2RU54 273 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 CARNS1A5YM72 827 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 CXorf49A8MYA2 514 aaPredicted RBP9.11□□□□□ -0.95
TDP1-210ENST00000554976 TRDMT1O14717 391 aaKnown RBP9.11□□□□□ -0.95
TDP1-210ENST00000554976 MATN3O15232 486 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 CNTN5O94779 1100 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 SRGAP2BP0DMP2 458 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 PHBP35232 272 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 TUFMP49411 452 aaKnown RBP9.11□□□□□ -0.95
TDP1-210ENST00000554976 NDST2P52849 883 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 OLIG2Q13516 323 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 IHHQ14623 411 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 KLHL38Q2WGJ6 581 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 FBXL22Q6P050 247 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 NECAB2Q7Z6G3 386 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 TMEM199Q8N511 208 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 TEX26Q8N6G2 289 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 PDCD7Q8N8D1 485 aaKnown RBP9.11□□□□□ -0.95
TDP1-210ENST00000554976 PDZD8Q8NEN9 1154 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 ADAMTS19Q8TE59 1207 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 AZIN2Q96A70 460 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 PAFAH2Q99487 392 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 VPS37BQ9H9H4 285 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 MPP6Q9NZW5 540 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 MARCH2Q9P0N8 246 aa9.11□□□□□ -0.95
TDP1-210ENST00000554976 PSMC3IPQ9P2W1 217 aaPredicted RBP9.11□□□□□ -0.95
TDP1-210ENST00000554976 ZNF180Q9UJW8 692 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms