RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 NEPROQ6NW34 567 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 C12orf50Q8NA57 414 aaPredicted RBP15.3■□□□□ 0.04
CUX1-214ENST00000550008 SNX27Q96L92 541 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 MRPL46Q9H2W6 279 aaKnown RBP15.3■□□□□ 0.04
CUX1-214ENST00000550008 TRHDEQ9UKU6 1024 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 STRCP1A6NGW2 1772 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 C2orf81A6NN90 581 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 PMM2O15305 246 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 ENTPD5O75356 428 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 RHOAP61586 193 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 DDX39BQ13838 428 aaKnown RBP15.3■□□□□ 0.04
CUX1-214ENST00000550008 FUT11Q495W5 492 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 RARS2Q5T160 578 aaKnown RBP15.3■□□□□ 0.04
CUX1-214ENST00000550008 DCUN1D1Q96GG9 259 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 TBL1YQ9BQ87 522 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 OSBPL7Q9BZF2 842 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 PIF1Q9H611 641 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 HMX1Q9NP08 348 aaPredicted RBP15.3■□□□□ 0.04
CUX1-214ENST00000550008 RRN3Q9NYV6 651 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 NCKIPSDQ9NZQ3 722 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 TRMT6Q9UJA5 497 aaKnown RBP15.3■□□□□ 0.04
CUX1-214ENST00000550008 RNF112Q9ULX5 631 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 SDK1Q7Z5N4 2213 aa15.3■□□□□ 0.04
CUX1-214ENST00000550008 PIGNO95427 931 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 GLP2RO95838 553 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 POU4F1Q01851 419 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 PDE1CQ14123 709 aaPredicted RBP15.29■□□□□ 0.04
CUX1-214ENST00000550008 GALNTL6Q49A17 601 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 TMEM154Q6P9G4 183 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 TMC7Q7Z402 723 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 SLC41A1Q8IVJ1 513 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 TLCD1Q96CP7 247 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 RNF208Q9H0X6 261 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 ABCC13Q9NSE7 274 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 TAGLN3Q9UI15 199 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 SHOX2O60902 331 aaPredicted RBP15.29■□□□□ 0.04
CUX1-214ENST00000550008 ASMTLO95671 621 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 ITGA2BP08514 1039 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 MAPRE2Q15555 327 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 CYP1B1Q16678 543 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 PPM1JQ5JR12 505 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 ANKRD23Q86SG2 305 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 ALYREFQ86V81 257 aaKnown RBP15.29■□□□□ 0.04
CUX1-214ENST00000550008 YME1L1Q96TA2 773 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 HAPLN2Q9GZV7 340 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 ARHGEF4Q9NR80 690 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 GEMIN8Q9NWZ8 242 aaKnown RBP15.29■□□□□ 0.04
CUX1-214ENST00000550008 F8W8V4 182 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 ZNF189O75820 626 aaPredicted RBP15.29■□□□□ 0.04
CUX1-214ENST00000550008 CDK16Q00536 496 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 PTP4A2Q12974 167 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 AGKQ53H12 422 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 SYPL2Q5VXT5 272 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 MFSD5Q6N075 450 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 SLC26A9Q7LBE3 791 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 CFAP52Q8N1V2 620 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 AGAP11Q8TF27 550 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 SPATA17Q96L03 361 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 TBC1D10AQ9BXI6 508 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 TRIM54Q9BYV2 358 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 SENP6Q9GZR1 1112 aaPredicted RBP15.29■□□□□ 0.04
CUX1-214ENST00000550008 CNGB3Q9NQW8 809 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 SLC17A6Q9P2U8 582 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 DNM1LO00429 736 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 CCL22O00626 93 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 KRT33BQ14525 404 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 SPANXN3Q5MJ09 141 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 SPATA22Q8NHS9 363 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 EMID1Q96A84 441 aaPredicted RBP15.29■□□□□ 0.04
CUX1-214ENST00000550008 MFSD3Q96ES6 412 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 CPNE1Q99829 537 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 DRC3Q9H069 523 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 SCUBE2Q9NQ36 999 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 TOGARAM1Q9Y4F4 1720 aa15.29■□□□□ 0.04
CUX1-214ENST00000550008 ENO4A6NNW6 628 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 ZBTB24O43167 697 aaPredicted RBP15.28■□□□□ 0.04
CUX1-214ENST00000550008 DNAJC8O75937 253 aaPredicted RBP15.28■□□□□ 0.04
CUX1-214ENST00000550008 DDHD2O94830 711 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 PROCP04070 461 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 KRT16P08779 473 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 ALADP13716 330 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 SP3Q02447 781 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 PLD1Q13393 1074 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 MED21Q13503 144 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 KCNA10Q16322 511 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 PSMD5Q16401 504 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 CCDC142Q17RM4 750 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 NOMO2Q5JPE7 1267 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 GRTP1Q5TC63 336 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 RNF168Q8IYW5 571 aaPredicted RBP15.28■□□□□ 0.04
CUX1-214ENST00000550008 RGS18Q9NS28 235 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 ACTL7BQ9Y614 415 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 GRIN2DO15399 1336 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 FAM95CA0A1B0GW59 222 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 UGT1A9O60656 530 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 EDF1O60869 148 aaKnown RBP15.28■□□□□ 0.04
CUX1-214ENST00000550008 LRG1P02750 347 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 ESRRGP62508 458 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 USP4Q13107 963 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 KCTD4Q8WVF5 259 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms