RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.82■□□□□ 0.28
VPS29-207ENST00000549970 A0A1B0GVT2 93 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 GOLGA8SH3BPF8 625 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 GFPT2O94808 682 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 ADCY5O95622 1261 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 TOP3BO95985 862 aaKnown RBP16.82■□□□□ 0.28
VPS29-207ENST00000549970 TPM2P07951 284 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 VAV1P15498 845 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 GABRB2P47870 512 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 PSMD8P48556 350 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 CSNK1EP49674 416 aaKnown RBP16.82■□□□□ 0.28
VPS29-207ENST00000549970 BNC1Q01954 994 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 DEUP1Q05D60 604 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 SULT2A1Q06520 285 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 MTA1Q13330 715 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 ZNF177Q13360 481 aaPredicted RBP16.82■□□□□ 0.28
VPS29-207ENST00000549970 NAA35Q5VZE5 725 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 RBM43Q6ZSC3 357 aaKnown RBP16.82■□□□□ 0.28
VPS29-207ENST00000549970 USP30Q70CQ3 517 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 SND1Q7KZF4 910 aaKnown RBP eCLIP16.82■□□□□ 0.284e-6■■■□□ 14.7
VPS29-207ENST00000549970 STK40Q8N2I9 435 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 MSANTD4Q8NCY6 345 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 OR52K2Q8NGK3 314 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 EPS8L1Q8TE68 723 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 CPA5Q8WXQ8 436 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 PTPRN2Q92932 1015 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 CAMK1GQ96NX5 476 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 TBCBQ99426 244 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 WDCPQ9H6R7 721 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 GAREM1Q9H706 876 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 IL21RQ9HBE5 538 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 ANLNQ9NQW6 1124 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 FAM207AQ9NSI2 230 aaPredicted RBP16.82■□□□□ 0.28
VPS29-207ENST00000549970 FANCLQ9NW38 375 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 SNX10Q9Y5X0 201 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 CACNA1BQ00975 2339 aa16.82■□□□□ 0.28
VPS29-207ENST00000549970 KNL1Q8NG31 2342 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 SH3BP5O60239 455 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 RNASEH2AO75792 299 aaKnown RBP16.81■□□□□ 0.28
VPS29-207ENST00000549970 LSM8O95777 96 aaKnown RBP16.81■□□□□ 0.28
VPS29-207ENST00000549970 CER1O95813 267 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 SLC8A1P32418 973 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 FLT3P36888 993 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 SCNN1AP37088 669 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 CXCR3P49682 368 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 AFF3P51826 1226 aaKnown RBP16.81■□□□□ 0.28
VPS29-207ENST00000549970 PLK1P53350 603 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 OXCT1P55809 520 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 POLR2FP61218 127 aaKnown RBP16.81■□□□□ 0.28
VPS29-207ENST00000549970 NOMO3P69849 1222 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 FAM193AP78312 1265 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 SFSWAPQ12872 951 aaKnown RBP16.81■□□□□ 0.28
VPS29-207ENST00000549970 SLC14A1Q13336 389 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 ST3GAL2Q16842 350 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 BRMS1LQ5PSV4 323 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 FKBP15Q5T1M5 1219 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 SASS6Q6UVJ0 657 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 IL27RAQ6UWB1 636 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 LRSAM1Q6UWE0 723 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 LAYNQ6UX15 382 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 SLC20A1Q8WUM9 679 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 OMDQ99983 421 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 NEUROG2Q9H2A3 272 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 TM9SF3Q9HD45 589 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 NLRC4Q9NPP4 1024 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 ARHGEF38Q9NXL2 777 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 SLC25A13Q9UJS0 675 aa16.81■□□□□ 0.28
VPS29-207ENST00000549970 ASPMQ8IZT6 3477 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 GOLGA6L22H0YM25 854 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 I6L893 689 aaPredicted RBP16.8■□□□□ 0.28
VPS29-207ENST00000549970 EPHB6O15197 1021 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 CLDN11O75508 207 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 CNTN5O94779 1100 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 IL1BP01584 269 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 GALCP54803 685 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 ELAVL3Q14576 367 aaKnown RBP16.8■□□□□ 0.28
VPS29-207ENST00000549970 TEAD4Q15561 434 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 HLA-BQ31612 363 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 SLC25A52Q3SY17 297 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 ACCSLQ4AC99 568 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 KIAA0895LQ68EN5 471 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 NCEH1Q6PIU2 408 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 NAXDQ8IW45 347 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 NT5C3BQ969T7 300 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 ALG14Q96F25 216 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 PPP1R9BQ96SB3 815 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 FAM129BQ96TA1 746 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 FEM1AQ9BSK4 669 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 MUC3BQ9H195 1237 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 TMPRSS4Q9NRS4 437 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 VPS28Q9UK41 221 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 WASF3Q9UPY6 502 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 FNDC3AQ9Y2H6 1198 aaKnown RBP16.8■□□□□ 0.28
VPS29-207ENST00000549970 PAXBP1Q9Y5B6 917 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 PCDHB9Q9Y5E1 797 aa16.8■□□□□ 0.28
VPS29-207ENST00000549970 ADH1BP00325 375 aa16.79■□□□□ 0.28
VPS29-207ENST00000549970 F9P00740 461 aa16.79■□□□□ 0.28
VPS29-207ENST00000549970 IGHV4-34P06331 123 aa16.79■□□□□ 0.28
VPS29-207ENST00000549970 RHOCP08134 193 aa16.79■□□□□ 0.28
VPS29-207ENST00000549970 ZNF18P17022 549 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms