RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 TBC1D23Q9NUY8 699 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 GPATCH2LQ9NWQ4 482 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SLC5A4Q9NY91 659 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 KLHL8Q9P2G9 620 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SLC17A7Q9P2U7 560 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 MORF4L1Q9UBU8 362 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SUSD2Q9UGT4 822 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 COG5Q9UP83 839 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SSX2IPQ9Y2D8 614 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 R3HDM2Q9Y2K5 976 aaKnown RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 MRPS23Q9Y3D9 190 aaKnown RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 PCDHB2Q9Y5E7 798 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 ZMYM2Q9UBW7 1377 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 MANSC4A6NHS7 340 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 CXCL11O14625 94 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 ATP6V1G1O75348 118 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 CSPG5O95196 566 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 NDUFB10O96000 172 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 HLA-DRAP01903 254 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 PMLP29590 882 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 GTF2H1P32780 548 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 ARL4AP40617 200 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 ELK3P41970 407 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SLC1A1P43005 524 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 HUNKP57058 714 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 OCA2Q04671 838 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 PPP3CAQ08209 521 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 DMPKQ09013 629 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 RIPK1Q13546 671 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 EFTUD2Q15029 972 aaKnown RBP eCLIP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 TMEM119Q4V9L6 283 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 DCAF15Q66K64 600 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 PLEKHA7Q6IQ23 1121 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 ANO7Q6IWH7 933 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 CGB2Q6NT52 195 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 RBM44Q6ZP01 1051 aaKnown RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 PID1Q7Z2X4 250 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 TMPRSS6Q8IU80 811 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 WDR60Q8WVS4 1066 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 PMM1Q92871 262 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 ATP6V0A1Q93050 837 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 PPP2R3CQ969Q6 453 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 DACT3Q96B18 629 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SLC6A18Q96N87 628 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 KCNK16Q96T55 309 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 CORO1BQ9BR76 489 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 CEP41Q9BYV8 373 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 DRC3Q9H069 523 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 COPS7BQ9H9Q2 264 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 FBRSQ9HAH7 460 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 FBXO28Q9NVF7 368 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 STX18Q9P2W9 335 aaKnown RBP5.62□□□□□ -1.51
LIMA1-203ENST00000547825 SEL1LQ9UBV2 794 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 CHKBQ9Y259 395 aa5.62□□□□□ -1.51
LIMA1-203ENST00000547825 A0A0A6YYK5 440 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 LINC00854A0A1B0GVQ3 168 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 M0QYV0 167 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 TPD52L2O43399 206 aaKnown RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 KRT7P08729 469 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 PDGFRAP16234 1089 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 SMARCA1P28370 1054 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 YWHABP31946 246 aaKnown RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 GNL1P36915 607 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 VCPP55072 806 aaKnown RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 TBL3Q12788 808 aaKnown RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 TFDP2Q14188 446 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 SLC5A9Q2M3M2 681 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF699Q32M78 642 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 LRRC8BQ6P9F7 803 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 CES3Q6UWW8 571 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ZDHHC24Q6UX98 284 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 CYP2R1Q6VVX0 501 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 SYDE1Q6ZW31 735 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF720Q7Z2F6 126 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 PIGWQ7Z7B1 504 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 CLNKQ7Z7G1 428 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 SEMA4DQ92854 862 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 CMTM5Q96DZ9 223 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF317Q96PQ6 595 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 MDFIQ99750 246 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 SYT11Q9BT88 431 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 POLR3CQ9BUI4 534 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 NMUR2Q9GZQ4 415 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 PTPRHQ9HD43 1115 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ZDHHC18Q9NUE0 388 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 AGO2Q9UKV8 859 aaKnown RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF214Q9UL59 606 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 PLA2G4CQ9UP65 541 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 TDRKHQ9Y2W6 561 aaKnown RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 RBMX2Q9Y388 322 aaKnown RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 SPTBN5Q9NRC6 3674 aaKnown RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ATXN2Q99700 1313 aaKnown RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 A0A1B0GVG6 124 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 FAM86B1E9PN63 330 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 GSC2O15499 205 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 C6orf222P0C671 652 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ARP10275 920 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ANXA13P27216 316 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ACTR2P61160 394 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms