RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 SERPINB6P35237 376 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 RPL34P49207 117 aaKnown RBP16.16■□□□□ 0.18
LDLR-204ENST00000545707 PAPOLAP51003 745 aaKnown RBP16.16■□□□□ 0.18
LDLR-204ENST00000545707 PGM2L1Q6PCE3 622 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 ALKAL1Q6UXT8 129 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 DHDDSQ86SQ9 333 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 SPNS2Q8IVW8 549 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 APPL2Q8NEU8 664 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 HSFY1Q96LI6 401 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 RBBP8Q99708 897 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 CPNE1Q99829 537 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 EIF2B3Q9NR50 452 aaKnown RBP16.16■□□□□ 0.18
LDLR-204ENST00000545707 CHRAC1Q9NRG0 131 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.16■□□□□ 0.18
LDLR-204ENST00000545707 POMPQ9Y244 141 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 ZNF638Q14966 1978 aaKnown RBP16.16■□□□□ 0.18
LDLR-204ENST00000545707 G3V2L1 256 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 NEMP1O14524 444 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 NRP1O14786 923 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 CCNT2O60583 730 aaKnown RBP16.16■□□□□ 0.18
LDLR-204ENST00000545707 CHRNGP07510 517 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 ERCC2P18074 760 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 PTPN3P26045 913 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 SERPINB5P36952 375 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 ACADSBP45954 432 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 DEUP1Q05D60 604 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 ITGA7Q13683 1181 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 CFAP157Q5JU67 520 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 GRTP1Q5TC63 336 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 B3GALNT2Q8NCR0 500 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 SIKE1Q9BRV8 207 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 VANGL2Q9ULK5 521 aa16.16■□□□□ 0.18
LDLR-204ENST00000545707 MRPL42Q9Y6G3 142 aaKnown RBP16.16■□□□□ 0.18
LDLR-204ENST00000545707 BRCA1P38398 1863 aaKnown RBP16.16■□□□□ 0.18
LDLR-204ENST00000545707 ZCWPW2A0A1B0GU75 182 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 AHCYL1O43865 530 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 GPR32O75388 356 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 SNAI1O95863 264 aaPredicted RBP16.15■□□□□ 0.18
LDLR-204ENST00000545707 COX4I1P13073 169 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 SMPD1P17405 629 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 MSX2P35548 267 aaPredicted RBP16.15■□□□□ 0.18
LDLR-204ENST00000545707 AQP4P55087 323 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 TBL3Q12788 808 aaKnown RBP16.15■□□□□ 0.18
LDLR-204ENST00000545707 INSCQ1MX18 579 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 ZNF792Q3KQV3 632 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 ISLR2Q6UXK2 745 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 PAQR9Q6ZVX9 377 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 ZNF410Q86VK4 478 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 NPWQ8N729 165 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.15■□□□□ 0.18
LDLR-204ENST00000545707 SLC7A14Q8TBB6 771 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 ACTRT2Q8TDY3 377 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 TMEM40Q8WWA1 233 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 CMTM5Q96DZ9 223 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 LENG8Q96PV6 779 aaPredicted RBP16.15■□□□□ 0.18
LDLR-204ENST00000545707 NPY6RQ99463 290 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 UBQLN1Q9UMX0 589 aaKnown RBP16.15■□□□□ 0.18
LDLR-204ENST00000545707 KCNH4Q9UQ05 1017 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 PIN4Q9Y237 131 aaKnown RBP16.15■□□□□ 0.18
LDLR-204ENST00000545707 DERAQ9Y315 318 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 XPO1O14980 1071 aaKnown RBP16.15■□□□□ 0.18
LDLR-204ENST00000545707 C2P06681 752 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 SPRP35270 261 aaPredicted RBP16.15■□□□□ 0.18
LDLR-204ENST00000545707 GARSP41250 739 aaKnown RBP16.15■□□□□ 0.18
LDLR-204ENST00000545707 MAP3K7CLP57077 242 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 MSLNQ13421 630 aaPredicted RBP16.15■□□□□ 0.18
LDLR-204ENST00000545707 DPYSQ14117 519 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 DBN1Q16643 649 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 ANKRD20A4Q4UJ75 823 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 SPANXN3Q5MJ09 141 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 PPM1LQ5SGD2 360 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 NOTUMQ6P988 496 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 OR6Y1Q8NGX8 325 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 GDPD5Q8WTR4 605 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 GBP5Q96PP8 586 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 NR1H4Q96RI1 486 aaPredicted RBP16.15■□□□□ 0.18
LDLR-204ENST00000545707 NAT9Q9BTE0 207 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 UNKQ9C0B0 810 aaKnown RBP16.15■□□□□ 0.18
LDLR-204ENST00000545707 CDH19Q9H159 772 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 STN1Q9H668 368 aaKnown RBP16.15■□□□□ 0.18
LDLR-204ENST00000545707 LRRC40Q9H9A6 602 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 IGSF9Q9P2J2 1179 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 PCDHB12Q9Y5F1 795 aa16.15■□□□□ 0.18
LDLR-204ENST00000545707 OTOFQ9HC10 1997 aa16.14■□□□□ 0.17
LDLR-204ENST00000545707 COL1A2P08123 1366 aa16.14■□□□□ 0.17
LDLR-204ENST00000545707 DCLK1O15075 740 aa16.14■□□□□ 0.17
LDLR-204ENST00000545707 FYNP06241 537 aa16.14■□□□□ 0.17
LDLR-204ENST00000545707 RAG1P15918 1043 aa16.14■□□□□ 0.17
LDLR-204ENST00000545707 ALOX15P16050 662 aaPredicted RBP16.14■□□□□ 0.17
LDLR-204ENST00000545707 MPSTP25325 297 aa16.14■□□□□ 0.17
LDLR-204ENST00000545707 CD68P34810 354 aaPredicted RBP16.14■□□□□ 0.17
LDLR-204ENST00000545707 NOS2P35228 1153 aa16.14■□□□□ 0.17
LDLR-204ENST00000545707 GJA5P36382 358 aa16.14■□□□□ 0.17
LDLR-204ENST00000545707 GLRBP48167 497 aa16.14■□□□□ 0.17
LDLR-204ENST00000545707 KLF10Q13118 480 aa16.14■□□□□ 0.17
LDLR-204ENST00000545707 GSTA3Q16772 222 aa16.14■□□□□ 0.17
LDLR-204ENST00000545707 EPGNQ6UW88 154 aa16.14■□□□□ 0.17
LDLR-204ENST00000545707 PDSS2Q86YH6 399 aa16.14■□□□□ 0.17
LDLR-204ENST00000545707 PSTKQ8IV42 348 aaKnown RBP16.14■□□□□ 0.17
LDLR-204ENST00000545707 GATA5Q9BWX5 397 aaPredicted RBP16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms