RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 MS4A13Q5J8X5 152 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 PPM1JQ5JR12 505 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 MANEALQ5VSG8 457 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 RWDD4Q6NW29 188 aaKnown RBP9.79□□□□□ -0.84
YBX3-215ENST00000544504 MAATS1Q7Z4T9 603 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 LRRC49Q8IUZ0 686 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 DENND1CQ8IV53 801 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 CCDC117Q8IWD4 279 aaPredicted RBP9.79□□□□□ -0.84
YBX3-215ENST00000544504 CPXM2Q8N436 756 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 C12orf50Q8NA57 414 aaPredicted RBP9.79□□□□□ -0.84
YBX3-215ENST00000544504 ZBTB44Q8NCP5 570 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 PCDH19Q8TAB3 1148 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 CCDC26Q8TAB7 109 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 TCEAL4Q96EI5 215 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 ZFRQ96KR1 1074 aaKnown RBP9.79□□□□□ -0.84
YBX3-215ENST00000544504 CYP2S1Q96SQ9 504 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 BRD8Q9H0E9 1235 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 LRRC19Q9H756 370 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 ARHGEF4Q9NR80 690 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 SLC2A4RGQ9NR83 387 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 SPATA6Q9NWH7 488 aaPredicted RBP9.79□□□□□ -0.84
YBX3-215ENST00000544504 SMPD4Q9NXE4 827 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 CFAP97Q9P2B7 532 aa9.79□□□□□ -0.84
YBX3-215ENST00000544504 RALYQ9UKM9 306 aaKnown RBP9.79□□□□□ -0.84
YBX3-215ENST00000544504 SMG5Q9UPR3 1016 aaKnown RBP9.79□□□□□ -0.84
YBX3-215ENST00000544504 CFAP69A5D8W1 941 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 DRGXA6NNA5 263 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 HACD1B0YJ81 288 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 PDE2AO00408 941 aaPredicted RBP9.78□□□□□ -0.84
YBX3-215ENST00000544504 RIOK3O14730 519 aaKnown RBP9.78□□□□□ -0.84
YBX3-215ENST00000544504 PPP1R12AO14974 1030 aaPredicted RBP9.78□□□□□ -0.84
YBX3-215ENST00000544504 CLDN11O75508 207 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 GAS8O95995 478 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 CYBBP04839 570 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 TUBBP07437 444 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 ERCC2P18074 760 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 TGM1P22735 817 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 ETFBP38117 255 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 MAPKAPK2P49137 400 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 OXCT1P55809 520 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 USP4Q13107 963 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 MMRN1Q13201 1228 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 DHX34Q14147 1143 aaKnown RBP9.78□□□□□ -0.84
YBX3-215ENST00000544504 PDK1Q15118 436 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 C5orf22Q49AR2 442 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 MPP7Q5T2T1 576 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 PIK3R6Q5UE93 754 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 RAP1GAP2Q684P5 730 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 AADACL2Q6P093 401 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 Q6ZNB5 142 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 SYDE1Q6ZW31 735 aaPredicted RBP9.78□□□□□ -0.84
YBX3-215ENST00000544504 CHST9Q7L1S5 443 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 ARID3BQ8IVW6 561 aaPredicted RBP9.78□□□□□ -0.84
YBX3-215ENST00000544504 NPAS3Q8IXF0 933 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 LGI2Q8N0V4 545 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 PYROXD2Q8N2H3 581 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 MMGT1Q8N4V1 131 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 PLD5Q8N7P1 536 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 RTL3Q8N8U3 475 aaKnown RBP9.78□□□□□ -0.84
YBX3-215ENST00000544504 HJURPQ8NCD3 748 aaPredicted RBP9.78□□□□□ -0.84
YBX3-215ENST00000544504 ZSCAN18Q8TBC5 510 aaPredicted RBP9.78□□□□□ -0.84
YBX3-215ENST00000544504 SH3RF2Q8TEC5 729 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 FGF13Q92913 245 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 SMARCD2Q92925 531 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 MAGOHBQ96A72 148 aaKnown RBP9.78□□□□□ -0.84
YBX3-215ENST00000544504 RPRD1AQ96P16 312 aaPredicted RBP9.78□□□□□ -0.84
YBX3-215ENST00000544504 SLC22A12Q96S37 553 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 PRMT1Q99873 361 aaKnown RBP9.78□□□□□ -0.84
YBX3-215ENST00000544504 AP1M1Q9BXS5 423 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 FOXQ1Q9C009 403 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 TRPV4Q9HBA0 871 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 ANLNQ9NQW6 1124 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 GKN1Q9NS71 199 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 THG1LQ9NWX6 298 aaKnown RBP9.78□□□□□ -0.84
YBX3-215ENST00000544504 ZSCAN32Q9NX65 697 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 AGO1Q9UL18 857 aaKnown RBP9.78□□□□□ -0.84
YBX3-215ENST00000544504 CDH7Q9ULB5 785 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 VANGL2Q9ULK5 521 aa9.78□□□□□ -0.84
YBX3-215ENST00000544504 DRG1Q9Y295 367 aaKnown RBP9.78□□□□□ -0.84
YBX3-215ENST00000544504 A0A1B0GVM2 712 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 KANSL1LA0AUZ9 987 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 TCAF2A6NFQ2 919 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 FAM187AA6NFU0 413 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 FAM72CH0Y354 149 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 I6L893 689 aaPredicted RBP9.77□□□□□ -0.85
YBX3-215ENST00000544504 NDC80O14777 642 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 SLC30A4O14863 429 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 DCLK1O15075 740 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 MTSS1O43312 755 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 LILRB5O75023 590 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 STK10O94804 968 aaKnown RBP9.77□□□□□ -0.85
YBX3-215ENST00000544504 KLKB1P03952 638 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 AMPD1P23109 780 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 MAGEA9P43362 315 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 NDST2P52849 883 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 CDH4P55283 916 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 YBEYP58557 167 aaPredicted RBP9.77□□□□□ -0.85
YBX3-215ENST00000544504 EIF3EP60228 445 aaKnown RBP9.77□□□□□ -0.85
YBX3-215ENST00000544504 DYNLT1P63172 113 aa9.77□□□□□ -0.85
YBX3-215ENST00000544504 CSTF1Q05048 431 aaKnown RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms