RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 LRRN4Q8WUT4 740 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 IRF7Q92985 503 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 E2F7Q96AV8 911 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 HAUS1Q96CS2 278 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 TMA16Q96EY4 203 aaKnown RBP9.61□□□□□ -0.87
DDX55-208ENST00000541259 FAM118BQ9BPY3 351 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 FAM83CQ9BQN1 747 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 MAK16Q9BXY0 300 aaKnown RBP9.61□□□□□ -0.87
DDX55-208ENST00000541259 ZYG11BQ9C0D3 744 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 KLC2Q9H0B6 622 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 EBF3Q9H4W6 596 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 HPS4Q9NQG7 708 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 RRAGDQ9NQL2 400 aaPredicted RBP9.61□□□□□ -0.87
DDX55-208ENST00000541259 SPHK2Q9NRA0 654 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 RCOR3Q9P2K3 495 aaPredicted RBP9.61□□□□□ -0.87
DDX55-208ENST00000541259 ZNF212Q9UDV6 495 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 COL4A2P08572 1712 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 WASH4PA8MWX3 477 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 ZNF487B1APH4 448 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 NEDD8-MDP1E9PL57 170 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 CES2O00748 559 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 SLC9A3R1O14745 358 aaPredicted RBP9.6□□□□□ -0.87
DDX55-208ENST00000541259 APOL1O14791 398 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 MAP3K6O95382 1288 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 CYP17A1P05093 508 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 ASGR2P07307 311 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 PECAM1P16284 738 aaPredicted RBP9.6□□□□□ -0.87
DDX55-208ENST00000541259 RHOQP17081 205 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 HOXD9P28356 352 aaPredicted RBP9.6□□□□□ -0.87
DDX55-208ENST00000541259 GDI1P31150 447 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 CETN2P41208 172 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 NUMBP49757 651 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 ZNF135P52742 658 aaPredicted RBP9.6□□□□□ -0.87
DDX55-208ENST00000541259 GUCA2AQ02747 115 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 GBE1Q04446 702 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 KLF1Q13351 362 aaPredicted RBP9.6□□□□□ -0.87
DDX55-208ENST00000541259 DHCR24Q15392 516 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 SIX1Q15475 284 aaPredicted RBP9.6□□□□□ -0.87
DDX55-208ENST00000541259 LONRF2Q1L5Z9 754 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 MPPE1Q53F39 396 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 RABGAP1LQ5R372 815 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 ACBD5Q5T8D3 534 aaPredicted RBP9.6□□□□□ -0.87
DDX55-208ENST00000541259 SLC9A4Q6AI14 798 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 BBS12Q6ZW61 710 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 B4GALNT4Q76KP1 1039 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 VSIG1Q86XK7 387 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 YAF2Q8IY57 180 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 CARNMT1Q8N4J0 409 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 NPWQ8N729 165 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 RTL3Q8N8U3 475 aaKnown RBP9.6□□□□□ -0.87
DDX55-208ENST00000541259 HJURPQ8NCD3 748 aaPredicted RBP9.6□□□□□ -0.87
DDX55-208ENST00000541259 OR52K2Q8NGK3 314 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 ACTRT1Q8TDG2 376 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 OTUB2Q96DC9 234 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 CELF6Q96J87 481 aaKnown RBP9.6□□□□□ -0.87
DDX55-208ENST00000541259 TRMT61BQ9BVS5 477 aaKnown RBP9.6□□□□□ -0.87
DDX55-208ENST00000541259 AP1M1Q9BXS5 423 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 NOL6Q9H6R4 1146 aaKnown RBP9.6□□□□□ -0.87
DDX55-208ENST00000541259 CATSPERBQ9H7T0 1116 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 KCNK12Q9HB15 430 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 TMEM248Q9NWD8 314 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 THG1LQ9NWX6 298 aaKnown RBP9.6□□□□□ -0.87
DDX55-208ENST00000541259 CDC23Q9UJX2 597 aa9.6□□□□□ -0.87
DDX55-208ENST00000541259 TTC7AQ9ULT0 858 aaPredicted RBP9.6□□□□□ -0.87
DDX55-208ENST00000541259 R3HDM2Q9Y2K5 976 aaKnown RBP9.6□□□□□ -0.87
DDX55-208ENST00000541259 F5P12259 2224 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 LOC730098B7Z3J9 87 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 PGRMC1O00264 195 aaKnown RBP9.59□□□□□ -0.87
DDX55-208ENST00000541259 TRIM24O15164 1050 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 CHADO15335 359 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 FGF10O15520 208 aaPredicted RBP9.59□□□□□ -0.87
DDX55-208ENST00000541259 MFSD11O43934 449 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 TJP3O95049 919 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 PENKP01210 267 aaPredicted RBP9.59□□□□□ -0.87
DDX55-208ENST00000541259 TYRP14679 529 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 HTR7P34969 479 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 CDH4P55283 916 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 TFDP2Q14188 446 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 PAFAH1B3Q15102 231 aaKnown RBP9.59□□□□□ -0.87
DDX55-208ENST00000541259 PDGFRLQ15198 375 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 KCTD19Q17RG1 926 aaPredicted RBP9.59□□□□□ -0.87
DDX55-208ENST00000541259 GAB4Q2WGN9 574 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 ANO4Q32M45 955 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 FSCBQ5H9T9 825 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 FAM182AQ5T1J6 154 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 RNF43Q68DV7 783 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 TMCO3Q6UWJ1 677 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 CHST9Q7L1S5 443 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 ARHGAP12Q8IWW6 846 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 SLC44A3Q8N4M1 653 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 KIAA1958Q8N8K9 716 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 NAT16Q8N8M0 369 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.59□□□□□ -0.87
DDX55-208ENST00000541259 DEPDC1BQ8WUY9 529 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 C1orf54Q8WWF1 131 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 BBS2Q9BXC9 721 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 SLC39A8Q9C0K1 460 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 C10orf88Q9H8K7 445 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 ECT2Q9H8V3 914 aa9.59□□□□□ -0.87
DDX55-208ENST00000541259 GTSE1Q9NYZ3 720 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms