RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 PCDHA3Q9Y5H8 950 aa18■□□□□ 0.47
CLSTN3-210ENST00000540931 KIF5CO60282 957 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 PALMO75781 387 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 ZNF189O75820 626 aaPredicted RBP17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 SOX9P48436 509 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 RWDD2BP57060 319 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 CCINQ13939 588 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 TFDP2Q14188 446 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 SMTNL2Q2TAL5 461 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 RAB6CQ53S08 254 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 TMCO4Q5TGY1 634 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 TMCO3Q6UWJ1 677 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 MAMSTRQ6ZN01 415 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 C14orf80Q86SX3 495 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 NLRP14Q86W24 1093 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 UMODL1-AS1Q8N2C9 162 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 CLDN23Q96B33 292 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 KCTD15Q96SI1 283 aaPredicted RBP17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 CALN1Q9BXU9 219 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 RAB6CQ9H0N0 254 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 MUC3BQ9H195 1237 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 PCDH18Q9HCL0 1135 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 KCND1Q9NSA2 647 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 ABCB8Q9NUT2 735 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 SALL4Q9UJQ4 1053 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 RAD54BQ9Y620 910 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 PTPRZ1P23471 2315 aaPredicted RBP17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 CFAP54Q96N23 3096 aa17.99■□□□□ 0.47
CLSTN3-210ENST00000540931 LRRD1A4D1F6 860 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 GRID2IPA4D2P6 1211 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 RAMP2O60895 175 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 SRPRAP08240 638 aaKnown RBP17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 HNRNPLP14866 589 aaKnown RBP eCLIP17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 AOC1P19801 751 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 KDELR1P24390 212 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 HLA-FP30511 346 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 AVPR2P30518 371 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 SLC6A11P48066 632 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 ST8SIA6P61647 398 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 RNF219Q5W0B1 726 aaPredicted RBP17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 ASTLQ6HA08 431 aaPredicted RBP17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 RETSATQ6NUM9 610 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 NT5DC3Q86UY8 548 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 PYROXD2Q8N2H3 581 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 PHTF2Q8N3S3 785 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 TTC17Q96AE7 1141 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 CHFRQ96EP1 664 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 TMPRSS4Q9NRS4 437 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 FAM86C1Q9NVL1 165 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 HAUS2Q9NVX0 235 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 ELOVL2Q9NXB9 296 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 MPP6Q9NZW5 540 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 CWC15Q9P013 229 aaKnown RBP17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 NDRG2Q9UN36 371 aaKnown RBP17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 TFR2Q9UP52 801 aa17.98■□□□□ 0.47
CLSTN3-210ENST00000540931 F5P12259 2224 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 ARHGAP42A6NI28 874 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 FAM72CH0Y354 149 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 ZBTB24O43167 697 aaPredicted RBP17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 GFRA3O60609 400 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 KRT1P04264 644 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 DLDP09622 509 aaKnown RBP17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 GOT1P17174 413 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 GJC1P36383 396 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 SGSHP51688 502 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 TAS2R40P59535 323 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 GNA12Q03113 381 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 LMAN2Q12907 356 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 DPYSQ14117 519 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 POLD3Q15054 466 aaPredicted RBP17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 PLEKHG6Q3KR16 790 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 ALFQ53S48 1182 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 TFDP3Q5H9I0 405 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 FAM72AQ5TYM5 149 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 FAM72DQ6L9T8 149 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 FSTL4Q6MZW2 842 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 TXNDC11Q6PKC3 985 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 C12orf40Q86WS4 652 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 FAM72BQ86X60 149 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 DCAF4L2Q8NA75 395 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 FLCNQ8NFG4 579 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 CASKIN2Q8WXE0 1202 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 FAF2Q96CS3 445 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 ZNF830Q96NB3 372 aaPredicted RBP17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 CSPG4P5Q96PW8 444 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 FEM1AQ9BSK4 669 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 LMAN1LQ9HAT1 526 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 SLC25A13Q9UJS0 675 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 VPS28Q9UK41 221 aa17.97■□□□□ 0.47
CLSTN3-210ENST00000540931 CHURC1-FNTBB4DL54 471 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 CNTN5O94779 1100 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 CHRNB1P11230 501 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 ERCC2P18074 760 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 MX2P20592 715 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 TARSP26639 723 aaKnown RBP17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 ARSEP51690 589 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 CLCN6P51797 869 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 KDSRQ06136 332 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 DPYSL3Q14195 570 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms