RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 SIN3BO75182 1162 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 ENDOD1O94919 500 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 CALB1P05937 261 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 SYPP08247 313 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 ENGP17813 658 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 CTSOP43234 321 aaPredicted RBP11.9□□□□□ -0.5
RTN3-209ENST00000538995 ZNF165P49910 485 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 ELAVL3Q14576 367 aaKnown RBP11.9□□□□□ -0.5
RTN3-209ENST00000538995 CLEC16AQ2KHT3 1053 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 KLHL40Q2TBA0 621 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 C2CD6Q53TS8 623 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 C9orf64Q5T6V5 341 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 TRNP1Q6NT89 227 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 LRRC31Q6UY01 552 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 SETD3Q86TU7 594 aaPredicted RBP11.9□□□□□ -0.5
RTN3-209ENST00000538995 CACUL1Q86Y37 369 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 PHF13Q86YI8 300 aaPredicted RBP11.9□□□□□ -0.5
RTN3-209ENST00000538995 DHX40Q8IX18 779 aaKnown RBP11.9□□□□□ -0.5
RTN3-209ENST00000538995 ZNF683Q8IZ20 524 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 RGL4Q8IZJ4 473 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 APCDD1Q8J025 514 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 DEFB119Q8N690 84 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 ALG14Q96F25 216 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 CFAP57Q96MR6 1250 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 HAPLN3Q96S86 360 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 C11orf70Q9BRQ4 267 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 ZDHHC5Q9C0B5 715 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 BTBD1Q9H0C5 482 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 SIK2Q9H0K1 926 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 PABPC3Q9H361 631 aaKnown RBP11.9□□□□□ -0.5
RTN3-209ENST00000538995 SGK2Q9HBY8 427 aa11.9□□□□□ -0.5
RTN3-209ENST00000538995 RTN4Q9NQC3 1192 aaKnown RBP11.9□□□□□ -0.5
RTN3-209ENST00000538995 METTL5Q9NRN9 209 aaKnown RBP11.9□□□□□ -0.5
RTN3-209ENST00000538995 GON4LQ3T8J9 2241 aa11.9□□□□□ -0.51
RTN3-209ENST00000538995 A0A1B0GTW7 788 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 A0A1W2PQC6 194 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 DRGXA6NNA5 263 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 TTC34A8MYJ7 566 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 UPK3BL1B0FP48 263 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 UPK3BL2E5RIL1 263 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 I6L893 689 aaPredicted RBP11.89□□□□□ -0.51
RTN3-209ENST00000538995 ADRB1P08588 477 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 FERP16591 822 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 PTMSP20962 102 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 CSRP1P21291 193 aaKnown RBP11.89□□□□□ -0.51
RTN3-209ENST00000538995 MZF1P28698 734 aaPredicted RBP11.89□□□□□ -0.51
RTN3-209ENST00000538995 SDC4P31431 198 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 PTPN9P43378 593 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 IRAK1P51617 712 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 ATXN3P54252 364 aaPredicted RBP11.89□□□□□ -0.51
RTN3-209ENST00000538995 PTP4A2Q12974 167 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 CST6Q15828 149 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 FILIP1LQ4L180 1135 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 PPP1R2P3Q6NXS1 205 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 LRSAM1Q6UWE0 723 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 STRADAQ7RTN6 431 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 C14orf80Q86SX3 495 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 C3orf20Q8ND61 904 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 SLC30A5Q8TAD4 765 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 PCDHB18PQ96TA0 734 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 FEM1AQ9BSK4 669 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 FUCA2Q9BTY2 467 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 RETREG1Q9H6L5 497 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 ANLNQ9NQW6 1124 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 ADAM22Q9P0K1 906 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 SLC25A13Q9UJS0 675 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 VPS28Q9UK41 221 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 FZD4Q9ULV1 537 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 NCKAP1Q9Y2A7 1128 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 OR51B4Q9Y5P0 310 aa11.89□□□□□ -0.51
RTN3-209ENST00000538995 C2CD4BA6NLJ0 364 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 E9PAM4 449 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 ARHGAP33O14559 1287 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 ATP9BO43861 1147 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 SEMA4FO95754 770 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 ADH1BP00325 375 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 RHOCP08134 193 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 KRT3P12035 628 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 ACSL1P33121 698 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 GGCXP38435 758 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 STK19P49842 368 aaPredicted RBP11.88□□□□□ -0.51
RTN3-209ENST00000538995 KRT83P78385 493 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 NRG1Q02297 640 aaPredicted RBP11.88□□□□□ -0.51
RTN3-209ENST00000538995 ARL13BQ3SXY8 428 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 ALFQ53S48 1182 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 C6orf118Q5T5N4 469 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 DCAF12L1Q5VU92 463 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 ZNF783Q6ZMS7 281 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 MON1BQ7L1V2 547 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 DSG4Q86SJ6 1040 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 FAM124AQ86V42 546 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 FAM131BQ86XD5 332 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 EMC1Q8N766 993 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 DCAF4L2Q8NA75 395 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 FRS2Q8WU20 508 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 PTPRN2Q92932 1015 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 RPL10LQ96L21 214 aaKnown RBP11.88□□□□□ -0.51
RTN3-209ENST00000538995 AGPAT1Q99943 283 aa11.88□□□□□ -0.51
RTN3-209ENST00000538995 C2orf49Q9BVC5 232 aaPredicted RBP11.88□□□□□ -0.51
RTN3-209ENST00000538995 MUC3BQ9H195 1237 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms