RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 ENPP3O14638 875 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 PRPF4O43172 522 aaKnown RBP eCLIP11.02□□□□□ -0.65
CLIP1-210ENST00000538120 COQ9O75208 318 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 OAZ2O95190 189 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 SELPP16109 830 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 GRK4P32298 578 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 OR1G1P47890 313 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 BLMHQ13867 455 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 ARTNQ5T4W7 220 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 DENND5BQ6ZUT9 1274 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 BEND5Q7L4P6 421 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 SCD5Q86SK9 330 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 SPATA2LQ8IUW3 424 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-210ENST00000538120 MPP5Q8N3R9 675 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 NPWQ8N729 165 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 ZNF296Q8WUU4 475 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-210ENST00000538120 TBC1D10AQ9BXI6 508 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 TKTL2Q9H0I9 626 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 WDCPQ9H6R7 721 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 TXLNGQ9NUQ3 528 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 STARD13Q9Y3M8 1113 aa11.02□□□□□ -0.65
CLIP1-210ENST00000538120 ARHGEF37A1IGU5 675 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 ENO4A6NNW6 628 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 RNF103O00237 685 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 TYROBPO43914 113 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 ENTPD5O75356 428 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 KRT15P19012 456 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 VEGFBP49765 207 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 CCNG1P51959 295 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 SLC5A3P53794 718 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 YWHAGP61981 247 aaKnown RBP eCLIP11.01□□□□□ -0.65
CLIP1-210ENST00000538120 AP1B1Q10567 949 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 PDK1Q15118 436 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 SLC39A12Q504Y0 691 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 LONP2Q86WA8 852 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 COLGALT1Q8NBJ5 622 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 URGCPQ8TCY9 931 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 GRAMD1AQ96CP6 724 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 CFAP36Q96G28 342 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 CYTH2Q99418 400 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 TRIM56Q9BRZ2 755 aaKnown RBP11.01□□□□□ -0.65
CLIP1-210ENST00000538120 CEP41Q9BYV8 373 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 C12orf65Q9H3J6 166 aaKnown RBP11.01□□□□□ -0.65
CLIP1-210ENST00000538120 RNPEPL1Q9HAU8 725 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 TMEM161AQ9NX61 479 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 PRG3Q9Y2Y8 225 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-210ENST00000538120 F5H423 210 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-210ENST00000538120 LINGO3P0C6S8 592 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 TPBGLP0DKB5 382 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 CALB2P22676 271 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 GATMP50440 423 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 SLC18A1P54219 525 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 TPI1P60174 286 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 KBTBD12Q3ZCT8 623 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 C4orf50Q6ZRC1 276 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 FAM126BQ8IXS8 530 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 ZNF567Q8N184 647 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 SLC44A1Q8WWI5 657 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 RAB3IPQ96QF0 476 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-210ENST00000538120 FTHL17Q9BXU8 183 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 YIPF3Q9GZM5 350 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 SMYD2Q9NRG4 433 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 SENP1Q9P0U3 644 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 KANSL3Q9P2N6 904 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 ZC3H7BQ9UGR2 993 aaKnown RBP11.01□□□□□ -0.65
CLIP1-210ENST00000538120 NEU3Q9UQ49 428 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 USH1CQ9Y6N9 552 aa11.01□□□□□ -0.65
CLIP1-210ENST00000538120 PTPRDP23468 1912 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 WDR91A4D1P6 747 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 CXorf49A8MYA2 514 aaPredicted RBP11□□□□□ -0.65
CLIP1-210ENST00000538120 EDF1O60869 148 aaKnown RBP11□□□□□ -0.65
CLIP1-210ENST00000538120 FKTNO75072 461 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 SPAG6O75602 509 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 WFS1O76024 890 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 FDFT1P37268 417 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 GRIK1P39086 918 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 TUBP50607 506 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 PARP6Q2NL67 630 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 ARL13BQ3SXY8 428 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 TAF1BQ53T94 588 aaPredicted RBP11□□□□□ -0.65
CLIP1-210ENST00000538120 PLEKHG4Q58EX7 1191 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 UNC5AQ6ZN44 842 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 CCNYQ8ND76 341 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 DBF4BQ8NFT6 615 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 C10orf82Q8WW14 230 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 LRRC39Q96DD0 335 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 CASD1Q96PB1 797 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 NUDCD1Q96RS6 583 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 GORASP1Q9BQQ3 440 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 OSBPL1AQ9BXW6 950 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 XRN2Q9H0D6 950 aaKnown RBP eCLIP11□□□□□ -0.65
CLIP1-210ENST00000538120 NMUR1Q9HB89 426 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 ARHGEF38Q9NXL2 777 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 OR12D3Q9UGF7 316 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 PPP1R12AO14974 1030 aaPredicted RBP11□□□□□ -0.65
CLIP1-210ENST00000538120 OPHN1O60890 802 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 LRIG2O94898 1065 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 PDHA1P08559 390 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 COL6A1P12109 1028 aa11□□□□□ -0.65
CLIP1-210ENST00000538120 CA4P22748 312 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms