RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 FAM208BQ5VWN6 2430 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 A0A1B0GTQ1 180 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 A0A1W2PR77 199 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 LRRC72A6NJI9 287 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 PLK4O00444 970 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 TNFSF14O43557 240 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 GLI1P08151 1106 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 GOT1P17174 413 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 C5AR1P21730 350 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 PON1P27169 355 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 CCR1P32246 355 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 GGCXP38435 758 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 GRK6P43250 576 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 IRAK1P51617 712 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 CCR5P51681 352 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 PLK1P53350 603 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 METAP1P53582 386 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 C21orf59P57076 290 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 CDK17Q00537 523 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 SFSWAPQ12872 951 aaKnown RBP8.72□□□□□ -1.01
USP28-203ENST00000537490 SLC12A1Q13621 1099 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 SHBQ15464 509 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 CAMK4Q16566 473 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 CCDC157Q569K6 752 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 RNF219Q5W0B1 726 aaPredicted RBP8.72□□□□□ -1.01
USP28-203ENST00000537490 OR6B2Q6IFH4 312 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 CXorf57Q6NSI4 855 aaKnown RBP8.72□□□□□ -1.01
USP28-203ENST00000537490 FBXL22Q6P050 247 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 C19orf48Q6RUI8 117 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.72□□□□□ -1.01
USP28-203ENST00000537490 GBP6Q6ZN66 633 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 SND1Q7KZF4 910 aaKnown RBP eCLIP8.72□□□□□ -1.01
USP28-203ENST00000537490 C14orf80Q86SX3 495 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 GATAD2AQ86YP4 633 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 OR14C36Q8NHC7 312 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 FRS2Q8WU20 508 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 SHC3Q92529 594 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 PPP1R13BQ96KQ4 1090 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 ELF4Q99607 663 aaPredicted RBP8.72□□□□□ -1.01
USP28-203ENST00000537490 ACE2Q9BYF1 805 aaPredicted RBP8.72□□□□□ -1.01
USP28-203ENST00000537490 CCDC86Q9H6F5 360 aaKnown RBP8.72□□□□□ -1.01
USP28-203ENST00000537490 FAM204AQ9H8W3 233 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 SIX2Q9NPC8 291 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 ASNSD1Q9NWL6 643 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 DDIT4Q9NX09 232 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 KIAA1468Q9P260 1216 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 APEX2Q9UBZ4 518 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 RWDD2AQ9UIY3 292 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 SARDHQ9UL12 918 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 FZD4Q9ULV1 537 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 PCDHGC3Q9UN70 934 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 ZFHX4Q86UP3 3567 aa8.72□□□□□ -1.01
USP28-203ENST00000537490 FRYQ5TBA9 3013 aa8.71□□□□□ -1.01
USP28-203ENST00000537490 TBC1D3DA0A087WVF3 549 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 TBC1D3IA0A087WXS9 549 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 TBC1D3EA0A087X179 549 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 TBC1D3KA0A087X1G2 549 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 A0A1B0GVM2 712 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 FAM149AA5PLN7 773 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 TBC1D3FA6NER0 549 aaPredicted RBP8.71□□□□□ -1.02
USP28-203ENST00000537490 TRABD2BA6NFA1 517 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 TCAF2A6NFQ2 919 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 TBC1D3LB9A6J9 549 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 CBX4O00257 560 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 FOXN3O00409 490 aaPredicted RBP8.71□□□□□ -1.02
USP28-203ENST00000537490 DFNA5O60443 496 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 ADH1BP00325 375 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 IL1BP01584 269 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 ERBB2P04626 1255 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 TBC1D3HP0C7X1 549 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 PNMA6AP0CW24 399 aaPredicted RBP8.71□□□□□ -1.02
USP28-203ENST00000537490 SLC2A3P11169 496 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 ABCB4P21439 1286 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 CD38P28907 300 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 DRD3P35462 400 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 CLCN1P35523 988 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 NNMTP40261 264 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 ADPRHP54922 357 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 PPP2CBP62714 309 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 PPP2CAP67775 309 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 CENPCQ03188 943 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 SULT2A1Q06520 285 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 AUHQ13825 339 aaKnown RBP8.71□□□□□ -1.02
USP28-203ENST00000537490 EXOC3L4Q17RC7 722 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 EFHC1Q5JVL4 640 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 TBC1D3GQ6DHY5 549 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 TBC1D3CQ6IPX1 549 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 OLFML1Q6UWY5 402 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 C11orf57Q6ZUT1 292 aaPredicted RBP8.71□□□□□ -1.02
USP28-203ENST00000537490 FAM183BPQ6ZVS7 135 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 TBC1D3Q8IZP1 549 aaPredicted RBP8.71□□□□□ -1.02
USP28-203ENST00000537490 C1orf131Q8NDD1 294 aaKnown RBP8.71□□□□□ -1.02
USP28-203ENST00000537490 RNF34Q969K3 372 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 FAM81BQ96LP2 452 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 RPRD1AQ96P16 312 aaPredicted RBP8.71□□□□□ -1.02
USP28-203ENST00000537490 ANLNQ9NQW6 1124 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 AASDHPPTQ9NRN7 309 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 DNAJC12Q9UKB3 198 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 VANGL2Q9ULK5 521 aa8.71□□□□□ -1.02
USP28-203ENST00000537490 GPSM3Q9Y4H4 160 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms