RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 CLEC4CQ8WTT0 213 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 FAM172AQ8WUF8 416 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 PRRX2Q99811 253 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 CALN1Q9BXU9 219 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 DUSP16Q9BY84 665 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.32□□□□□ -0.44
CLIP1-208ENST00000537004 OSER1Q9NX31 292 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 SAE1Q9UBE0 346 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-208ENST00000537004 NUDT5Q9UKK9 219 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 ARHGAP26Q9UNA1 814 aa12.32□□□□□ -0.44
CLIP1-208ENST00000537004 PTPRZ1P23471 2315 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-208ENST00000537004 PATJQ8NI35 1801 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 TICRRQ7Z2Z1 1910 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 FAM92AA1XBS5 289 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 SOBPA7XYQ1 873 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 LEFTY2O00292 366 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 MAN2B1O00754 1011 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 OLFM2O95897 454 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 DESP17661 470 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 ACADSBP45954 432 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 USP4Q13107 963 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 RUNX3Q13761 415 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 PON2Q15165 354 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 P3H1Q32P28 736 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 ITPRIPL2Q3MIP1 535 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 DNAJC21Q5F1R6 531 aaKnown RBP12.31□□□□□ -0.44
CLIP1-208ENST00000537004 IZUMO3Q5VZ72 239 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 SLC26A9Q7LBE3 791 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 RFX6Q8HWS3 928 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 C1orf210Q8IVY1 113 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 MAML2Q8IZL2 1156 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-208ENST00000537004 GLIS1Q8NBF1 620 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 TTC13Q8NBP0 860 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 ACTL9Q8TC94 416 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 CCHCR1Q8TD31 782 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 HSFY1Q96LI6 401 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 KIF9Q9HAQ2 790 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 LMAN1LQ9HAT1 526 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 NMUR1Q9HB89 426 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 FBRSL1Q9HCM7 1045 aaKnown RBP12.31□□□□□ -0.44
CLIP1-208ENST00000537004 DUS2Q9NX74 493 aaKnown RBP12.31□□□□□ -0.44
CLIP1-208ENST00000537004 OBSL1O75147 1896 aa12.31□□□□□ -0.44
CLIP1-208ENST00000537004 EP300Q09472 2414 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-208ENST00000537004 XPO1O14980 1071 aaKnown RBP12.3□□□□□ -0.44
CLIP1-208ENST00000537004 RIPK2O43353 540 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 ENDOD1O94919 500 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 SHBGP04278 402 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 ZDHHC11BP0C7U3 371 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 MBL2P11226 248 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-208ENST00000537004 CHKAP35790 457 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 SCNN1AP37088 669 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 PPP3CCP48454 512 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 CDH6P55285 790 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 SLC7A9P82251 487 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 OTUD4Q01804 1114 aaKnown RBP12.3□□□□□ -0.44
CLIP1-208ENST00000537004 MTAPQ13126 283 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 GAS6Q14393 721 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 SLC29A2Q14542 456 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 KRT71Q3SY84 523 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 UBAP2Q5T6F2 1119 aaKnown RBP12.3□□□□□ -0.44
CLIP1-208ENST00000537004 SCYL2Q6P3W7 929 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 WBP2Q969T9 261 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 CLDN23Q96B33 292 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 ZFRQ96KR1 1074 aaKnown RBP12.3□□□□□ -0.44
CLIP1-208ENST00000537004 TMEM121Q9BTD3 319 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 FRMD8P1Q9BZ68 369 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-208ENST00000537004 LRRC4CQ9HCJ2 640 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 SPATA6Q9NWH7 488 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-208ENST00000537004 MRPS17Q9Y2R5 130 aaKnown RBP12.3□□□□□ -0.44
CLIP1-208ENST00000537004 MYO18AQ92614 2054 aaKnown RBP12.3□□□□□ -0.44
CLIP1-208ENST00000537004 DENND4CQ5VZ89 1909 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 SGK1O00141 431 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 CHRNB1P11230 501 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 NR1D1P20393 614 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 HOXC13P31276 330 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 PTPN9P43378 593 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 ARSEP51690 589 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 NUBP1P53384 320 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 SLC8A3P57103 927 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 MMRN1Q13201 1228 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 DPYSL3Q14195 570 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 EML3Q32P44 896 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 BOLA3Q53S33 107 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 HECTD3Q5T447 861 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 TSSK4Q6SA08 328 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 Q6ZS52 159 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 TRMT10CQ7L0Y3 403 aaKnown RBP12.3□□□□□ -0.44
CLIP1-208ENST00000537004 ARCQ7LC44 396 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 ALYREFQ86V81 257 aaKnown RBP12.3□□□□□ -0.44
CLIP1-208ENST00000537004 OSCP1Q8WVF1 389 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 NDRG1Q92597 394 aaKnown RBP12.3□□□□□ -0.44
CLIP1-208ENST00000537004 NELL2Q99435 816 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 OSBPL6Q9BZF3 934 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 FBXO44Q9H4M3 255 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 ECT2Q9H8V3 914 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 CFAP97Q9P2B7 532 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 NUP210Q8TEM1 1887 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-208ENST00000537004 COL4A2P08572 1712 aa12.3□□□□□ -0.44
CLIP1-208ENST00000537004 ANAPC1Q9H1A4 1944 aa12.29□□□□□ -0.44
CLIP1-208ENST00000537004 MYO16Q9Y6X6 1858 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms