RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 PCDHA3Q9Y5H8 950 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 IGHV1OR15-9A0A0B4J2B8 117 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 MAPK13O15264 365 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 ZBTB24O43167 697 aaPredicted RBP8.54□□□□□ -1.04
NEDD8-207ENST00000533242 RTN2O75298 545 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 ZNF217O75362 1048 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 GJB3O75712 270 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 SHBGP04278 402 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 TMEM191BP0C7N4 346 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 CCDC172P0C7W6 258 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 FTH1P19P0C7X4 201 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 MBL2P11226 248 aaPredicted RBP8.54□□□□□ -1.04
NEDD8-207ENST00000533242 LSP1P33241 339 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 CTNNA1P35221 906 aaKnown RBP8.54□□□□□ -1.04
NEDD8-207ENST00000533242 DR1Q01658 176 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 DHX9Q08211 1270 aaKnown RBP8.54□□□□□ -1.04
NEDD8-207ENST00000533242 SIX1Q15475 284 aaPredicted RBP8.54□□□□□ -1.04
NEDD8-207ENST00000533242 COL28A1Q2UY09 1125 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 LY6G5CQ5SRR4 150 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 TDRD10Q5VZ19 366 aaKnown RBP8.54□□□□□ -1.04
NEDD8-207ENST00000533242 BTBD8Q5XKL5 378 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 SPOPLQ6IQ16 392 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 C11orf63Q6NUN7 778 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 NUDT18Q6ZVK8 323 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 JAMLQ86YT9 394 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 RHOT2Q8IXI1 618 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 ETFBKMTQ8IXQ9 262 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 DEFB119Q8N690 84 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 ZNF513Q8N8E2 541 aaPredicted RBP8.54□□□□□ -1.04
NEDD8-207ENST00000533242 EIF1ADQ8N9N8 165 aaKnown RBP8.54□□□□□ -1.04
NEDD8-207ENST00000533242 MYCBPAPQ8TBZ2 947 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 FBXO25Q8TCJ0 367 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 HPDLQ96IR7 371 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 ANKRD36BP1Q96IX9 119 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 NUP85Q9BW27 656 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 MTMR12Q9C0I1 747 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 FAM124BQ9H5Z6 455 aaPredicted RBP8.54□□□□□ -1.04
NEDD8-207ENST00000533242 CCDC86Q9H6F5 360 aaKnown RBP8.54□□□□□ -1.04
NEDD8-207ENST00000533242 TMEM8AQ9HCN3 771 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 RAB20Q9NX57 234 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 GRHL1Q9NZI5 618 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 SUSD2Q9UGT4 822 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 ATP8A1Q9Y2Q0 1164 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 SNX24Q9Y343 169 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 FRYQ5TBA9 3013 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 AKAP13Q12802 2813 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 TBC1D3BA6NDS4 549 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 O00370 1275 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 KIAA0391O15091 583 aaKnown RBP8.54□□□□□ -1.04
NEDD8-207ENST00000533242 PMM2O15305 246 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 SH3BP5O60239 455 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 FAM163BP0C2L3 166 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 HOXB2P14652 356 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 LMO2P25791 158 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 NTSR1P30989 418 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 KCNJ1P48048 391 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 CETN1Q12798 172 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 TAF10Q12962 218 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 GLRX5Q86SX6 157 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 SLC41A1Q8IVJ1 513 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 NAXDQ8IW45 347 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 PDZD8Q8NEN9 1154 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 OR2I1PQ8NGU4 316 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 OVCA2Q8WZ82 227 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 SLITRK1Q96PX8 696 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 ERP44Q9BS26 406 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 ZDHHC4Q9NPG8 344 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 DEC1Q9P2X7 70 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 APOBEC2Q9Y235 224 aaKnown RBP8.54□□□□□ -1.04
NEDD8-207ENST00000533242 STARD13Q9Y3M8 1113 aa8.54□□□□□ -1.04
NEDD8-207ENST00000533242 F8VP50 259 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 SCAMP3O14828 347 aaKnown RBP8.53□□□□□ -1.04
NEDD8-207ENST00000533242 TULP3O75386 442 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 TNNC2P02585 160 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 CYP1A2P05177 515 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 RPL21P46778 160 aaKnown RBP8.53□□□□□ -1.04
NEDD8-207ENST00000533242 TCEAL1Q15170 157 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 SURF1Q15526 300 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 PLEKHG6Q3KR16 790 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 TERB1Q8NA31 727 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 FBXL13Q8NEE6 735 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 ZNF564Q8TBZ8 553 aaPredicted RBP8.53□□□□□ -1.04
NEDD8-207ENST00000533242 ZNF653Q96CK0 615 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 PCED1BQ96HM7 432 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 ZNF419Q96HQ0 510 aaPredicted RBP8.53□□□□□ -1.04
NEDD8-207ENST00000533242 CAMK1GQ96NX5 476 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 ZDHHC5Q9C0B5 715 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 SCUBE2Q9NQ36 999 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 SLC12A6Q9UHW9 1150 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 UTP11Q9Y3A2 253 aaKnown RBP8.53□□□□□ -1.04
NEDD8-207ENST00000533242 A0A1W2PQF6 199 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 TP73O15350 636 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 PPFIA2O75334 1257 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 MTA2O94776 668 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 CLSTN1O94985 981 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 RTN3O95197 1032 aaPredicted RBP8.53□□□□□ -1.04
NEDD8-207ENST00000533242 PDGFRBP09619 1106 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 RARAP10276 462 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 GZMAP12544 262 aa8.53□□□□□ -1.04
NEDD8-207ENST00000533242 CTNNA2P26232 953 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms