RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 SUZ12Q15022 739 aaKnown RBP17.35■□□□□ 0.37
CPSF1-207ENST00000531727 PTPN20Q4JDL3 420 aa17.35■□□□□ 0.37
CPSF1-207ENST00000531727 OR6B2Q6IFH4 312 aa17.35■□□□□ 0.37
CPSF1-207ENST00000531727 CXorf57Q6NSI4 855 aaKnown RBP17.35■□□□□ 0.37
CPSF1-207ENST00000531727 FBXL22Q6P050 247 aa17.35■□□□□ 0.37
CPSF1-207ENST00000531727 NCEH1Q6PIU2 408 aa17.35■□□□□ 0.37
CPSF1-207ENST00000531727 LAYNQ6UX15 382 aa17.35■□□□□ 0.37
CPSF1-207ENST00000531727 SLC47A2Q86VL8 602 aa17.35■□□□□ 0.37
CPSF1-207ENST00000531727 FAM114A1Q8IWE2 563 aa17.35■□□□□ 0.37
CPSF1-207ENST00000531727 OR2T34Q8NGX1 318 aa17.35■□□□□ 0.37
CPSF1-207ENST00000531727 PTPRN2Q92932 1015 aa17.35■□□□□ 0.37
CPSF1-207ENST00000531727 A0A1W2PPC4 97 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 LRRC72A6NJI9 287 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 C10orf142B7Z368 130 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 PNMA6AP0CW24 399 aaPredicted RBP17.34■□□□□ 0.37
CPSF1-207ENST00000531727 C5AR1P21730 350 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 CLCN1P35523 988 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 CTSKP43235 329 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 PSMD8P48556 350 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 RACK1P63244 317 aaKnown RBP17.34■□□□□ 0.37
CPSF1-207ENST00000531727 SLC6A3Q01959 620 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 TP53BP1Q12888 1972 aaPredicted RBP17.34■□□□□ 0.37
CPSF1-207ENST00000531727 NME3Q13232 169 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 ELAVL3Q14576 367 aaKnown RBP17.34■□□□□ 0.37
CPSF1-207ENST00000531727 SLC26A9Q7LBE3 791 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 ADAT2Q7Z6V5 191 aaKnown RBP17.34■□□□□ 0.37
CPSF1-207ENST00000531727 SLCO6A1Q86UG4 719 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 FAM71AQ8IYT1 594 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 STK40Q8N2I9 435 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 AADATQ8N5Z0 425 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 RPRD1AQ96P16 312 aaPredicted RBP17.34■□□□□ 0.37
CPSF1-207ENST00000531727 CDC6Q99741 560 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 CLSTN2Q9H4D0 955 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 CHMP5Q9NZZ3 219 aa17.34■□□□□ 0.37
CPSF1-207ENST00000531727 H0Y8X5 98 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 KCNK3O14649 394 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 VILLO15195 856 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 GOT1P17174 413 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 NOS2P35228 1153 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 NUMBP49757 651 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 VASPP50552 380 aaPredicted RBP17.33■□□□□ 0.36
CPSF1-207ENST00000531727 CCR5P51681 352 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 CENPCQ03188 943 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 AUHQ13825 339 aaKnown RBP17.33■□□□□ 0.36
CPSF1-207ENST00000531727 VWA3BQ502W6 1294 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 KCNT1Q5JUK3 1230 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 MIIPQ5JXC2 388 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 SND1Q7KZF4 910 aaKnown RBP eCLIP17.33■□□□□ 0.36
CPSF1-207ENST00000531727 ZDHHC17Q8IUH5 632 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 ZNF397Q8NF99 534 aaPredicted RBP17.33■□□□□ 0.36
CPSF1-207ENST00000531727 RHBDD1Q8TEB9 315 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 FRS2Q8WU20 508 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 SLC6A18Q96N87 628 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 PPP1R9BQ96SB3 815 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 TUBGCP2Q9BSJ2 902 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 ACE2Q9BYF1 805 aaPredicted RBP17.33■□□□□ 0.36
CPSF1-207ENST00000531727 NDST4Q9H3R1 872 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 SYNCQ9H7C4 482 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 EBF2Q9HAK2 575 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 PLCB1Q9NQ66 1216 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 RRN3Q9NYV6 651 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 VANGL2Q9ULK5 521 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 BTBD3Q9Y2F9 522 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 HS3ST4Q9Y661 456 aa17.33■□□□□ 0.36
CPSF1-207ENST00000531727 SPEGQ15772 3267 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 SRRM3A6NNA2 597 aaPredicted RBP17.32■□□□□ 0.36
CPSF1-207ENST00000531727 M0QYT0 321 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 PCDHGA12O60330 932 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 DFNA5O60443 496 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 IL1BP01584 269 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 PRKCSHP14314 528 aaPredicted RBP17.32■□□□□ 0.36
CPSF1-207ENST00000531727 VAV1P15498 845 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 ERCC5P28715 1186 aaPredicted RBP17.32■□□□□ 0.36
CPSF1-207ENST00000531727 CCT8P50990 548 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 IRAK1P51617 712 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 ADPRHP54922 357 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 C21orf59P57076 290 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 BPIFB4P59827 614 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 KCNJ12Q14500 433 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 DPCR1Q3MIW9 517 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 OTUD1Q5VV17 481 aaPredicted RBP17.32■□□□□ 0.36
CPSF1-207ENST00000531727 DPY19L2P1Q6NXN4 242 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 LRSAM1Q6UWE0 723 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 ALG14Q96F25 216 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 SPAG5Q96R06 1193 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 FEM1AQ9BSK4 669 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 TOR4AQ9NXH8 423 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 SLC25A13Q9UJS0 675 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 TPX2Q9ULW0 747 aaKnown RBP17.32■□□□□ 0.36
CPSF1-207ENST00000531727 ZZEF1O43149 2961 aa17.32■□□□□ 0.36
CPSF1-207ENST00000531727 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-207ENST00000531727 PAGE1O75459 146 aa17.31■□□□□ 0.36
CPSF1-207ENST00000531727 CLDN11O75508 207 aa17.31■□□□□ 0.36
CPSF1-207ENST00000531727 ATXN1LP0C7T5 689 aaKnown RBP17.31■□□□□ 0.36
CPSF1-207ENST00000531727 CDH5P33151 784 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-207ENST00000531727 DRD3P35462 400 aa17.31■□□□□ 0.36
CPSF1-207ENST00000531727 GRK6P43250 576 aa17.31■□□□□ 0.36
CPSF1-207ENST00000531727 ZNF177Q13360 481 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-207ENST00000531727 DRAP1Q14919 205 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-207ENST00000531727 C5orf22Q49AR2 442 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms