RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.7■□□□□ 0.74
VPS28-213ENST00000530983 A0A1B0GVG6 124 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 M0QYT0 321 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 BEST1O76090 585 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 NCF2P19878 526 aaPredicted RBP19.7■□□□□ 0.74
VPS28-213ENST00000530983 NOS2P35228 1153 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 LIMK2P53671 638 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 USP4Q13107 963 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 FSTL4Q6MZW2 842 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 NAPRTQ6XQN6 538 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 FRMD7Q6ZUT3 714 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 FASTKD5Q7L8L6 764 aaKnown RBP19.7■□□□□ 0.74
VPS28-213ENST00000530983 LIMS2Q7Z4I7 341 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 STRA8Q7Z7C7 330 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 ZNF781Q8N8C0 355 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 ZNF669Q96BR6 464 aaPredicted RBP19.7■□□□□ 0.74
VPS28-213ENST00000530983 AGAP3Q96P47 875 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 AGAP2Q99490 1192 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 DDX50Q9BQ39 737 aaKnown RBP19.7■□□□□ 0.74
VPS28-213ENST00000530983 LRRC40Q9H9A6 602 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.7■□□□□ 0.74
VPS28-213ENST00000530983 KLK14Q9P0G3 267 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 ADAM28Q9UKQ2 775 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 ZCWPW2A0A1B0GU75 182 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 EEF2KO00418 725 aaKnown RBP19.69■□□□□ 0.74
VPS28-213ENST00000530983 ITGAXP20702 1163 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 PTPN3P26045 913 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 NDUFV1P49821 464 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 SERPINB8P50452 374 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 CDK7P50613 346 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 NME3Q13232 169 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 B3GALNT2Q8NCR0 500 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 NLGN2Q8NFZ4 835 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 CCDC124Q96CT7 223 aaKnown RBP19.69■□□□□ 0.74
VPS28-213ENST00000530983 COG4Q9H9E3 785 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 LOC100653049A0A140TA62 436 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 G3V2L1 256 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 FAM72CH0Y354 149 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 CLDN5O00501 218 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 DCXO43602 365 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 ZBTB14O43829 449 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 KRT34O76011 436 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 CD4P01730 458 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 MMP3P08254 477 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 SPRP35270 261 aaPredicted RBP19.69■□□□□ 0.74
VPS28-213ENST00000530983 SOX4Q06945 474 aaPredicted RBP19.69■□□□□ 0.74
VPS28-213ENST00000530983 FAM72AQ5TYM5 149 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 FAM72DQ6L9T8 149 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 TMEM135Q86UB9 458 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 OSTM1Q86WC4 334 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 FAM72BQ86X60 149 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.69■□□□□ 0.74
VPS28-213ENST00000530983 RNF169Q8NCN4 708 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 SLC26A7Q8TE54 656 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 ZNF560Q96MR9 790 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 DUSP16Q9BY84 665 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 KLHL8Q9P2G9 620 aaPredicted RBP19.69■□□□□ 0.74
VPS28-213ENST00000530983 PDP2Q9P2J9 529 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 VANGL2Q9ULK5 521 aa19.69■□□□□ 0.74
VPS28-213ENST00000530983 AP2A1O95782 977 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 ZCCHC18P0CG32 403 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 ABCG1P45844 678 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 IRF9Q00978 393 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 ASPHQ12797 758 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 HNRNPDQ14103 355 aaKnown RBP19.68■□□□□ 0.74
VPS28-213ENST00000530983 DLG2Q15700 870 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 EPGNQ6UW88 154 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 CLEC14AQ86T13 490 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 DEFB107AQ8IZN7 70 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 PPP1R13LQ8WUF5 828 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 TNIP3Q96KP6 325 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 TUBGCP5Q96RT8 1024 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 HNRNPABQ99729 332 aaKnown RBP19.68■□□□□ 0.74
VPS28-213ENST00000530983 CDH19Q9H159 772 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 EBF3Q9H4W6 596 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 CAB39LQ9H9S4 337 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 MAN1C1Q9NR34 630 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 ADAMTS6Q9UKP5 1117 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 ZMPSTE24O75844 475 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 SNAI1O95863 264 aaPredicted RBP19.68■□□□□ 0.74
VPS28-213ENST00000530983 TAF6P49848 677 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 TTLL12Q14166 644 aaPredicted RBP19.68■□□□□ 0.74
VPS28-213ENST00000530983 SLC9B1Q4ZJI4 515 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 HFE2Q6ZVN8 426 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 PDSS2Q86YH6 399 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 MAPK15Q8TD08 544 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 WNT8BQ93098 351 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 PPP2R3CQ969Q6 453 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 SLC2A13Q96QE2 648 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 POMPQ9Y244 141 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 CDY2AQ9Y6F7 541 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 CDY1Q9Y6F8 540 aa19.68■□□□□ 0.74
VPS28-213ENST00000530983 A0A096LPK6 155 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 I6L893 689 aaPredicted RBP19.67■□□□□ 0.74
VPS28-213ENST00000530983 HOXD8P13378 290 aaPredicted RBP19.67■□□□□ 0.74
VPS28-213ENST00000530983 SMPD1P17405 629 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 PDCD2Q16342 344 aaPredicted RBP19.67■□□□□ 0.74
VPS28-213ENST00000530983 PAQR9Q6ZVX9 377 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 HPS6Q86YV9 775 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 JADE3Q92613 823 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms