RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 E7ESA3 106 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 MLLT6P55198 1093 aaPredicted RBP19.39■□□□□ 0.69
VPS28-207ENST00000526977 SLC45A4Q5BKX6 768 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 FOXR1Q6PIV2 292 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 RFX8Q6ZV50 586 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 ANKMY2Q8IV38 441 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 CDKL3Q8IVW4 592 aaPredicted RBP19.39■□□□□ 0.69
VPS28-207ENST00000526977 ATXN3LQ9H3M9 355 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 RABEP2Q9H5N1 569 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 RAB6BQ9NRW1 208 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 E7EVH7 732 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 FAM72CH0Y354 149 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 MYL4P12829 197 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 NRG1Q02297 640 aaPredicted RBP19.39■□□□□ 0.69
VPS28-207ENST00000526977 KCNJ11Q14654 390 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 CCDC38Q502W7 563 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 FAM72AQ5TYM5 149 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 FAM72DQ6L9T8 149 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 FAM72BQ86X60 149 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 CYP4X1Q8N118 509 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 CCDC33Q8N5R6 958 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 BCAS4Q8TDM0 211 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 PLD4Q96BZ4 506 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 SIK2Q9H0K1 926 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 EPN3Q9H201 632 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 MYO7AQ13402 2215 aa19.39■□□□□ 0.69
VPS28-207ENST00000526977 CCDC195A0A1B0GUA6 201 aa19.38■□□□□ 0.69
VPS28-207ENST00000526977 OLFM2O95897 454 aa19.38■□□□□ 0.69
VPS28-207ENST00000526977 MOCS2O96007 188 aaPredicted RBP19.38■□□□□ 0.69
VPS28-207ENST00000526977 IVLP07476 585 aa19.38■□□□□ 0.69
VPS28-207ENST00000526977 HDCP19113 662 aa19.38■□□□□ 0.69
VPS28-207ENST00000526977 HARS2P49590 506 aaKnown RBP19.38■□□□□ 0.69
VPS28-207ENST00000526977 GPX6P59796 221 aa19.38■□□□□ 0.69
VPS28-207ENST00000526977 TPI1P60174 286 aa19.38■□□□□ 0.69
VPS28-207ENST00000526977 TXNDC8Q6A555 127 aa19.38■□□□□ 0.69
VPS28-207ENST00000526977 PDZD4Q76G19 769 aaPredicted RBP19.38■□□□□ 0.69
VPS28-207ENST00000526977 PYROXD1Q8WU10 500 aa19.38■□□□□ 0.69
VPS28-207ENST00000526977 TRPC7Q9HCX4 862 aa19.38■□□□□ 0.69
VPS28-207ENST00000526977 DNMT3BQ9UBC3 853 aaKnown RBP19.38■□□□□ 0.69
VPS28-207ENST00000526977 LGALS13Q9UHV8 139 aa19.38■□□□□ 0.69
VPS28-207ENST00000526977 TNRC18O15417 2968 aaPredicted RBP19.37■□□□□ 0.69
VPS28-207ENST00000526977 A0A1W2PPC1 479 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 SOBPA7XYQ1 873 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 RFXAPO00287 272 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 CHADO15335 359 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 GCATO75600 419 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 LRIG2O94898 1065 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 PAPLNO95428 1278 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 HMBSP08397 361 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 KCNC3Q14003 757 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 DPYSQ14117 519 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 PDIK1LQ8N165 341 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 CCDC110Q8TBZ0 833 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 ARHGEF2Q92974 986 aaKnown RBP19.37■□□□□ 0.69
VPS28-207ENST00000526977 AZIN2Q96A70 460 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 OLFM3Q96PB7 478 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 QKIQ96PU8 341 aaKnown RBP eCLIP19.37■□□□□ 0.69
VPS28-207ENST00000526977 WDR83Q9BRX9 315 aaKnown RBP19.37■□□□□ 0.69
VPS28-207ENST00000526977 KLF16Q9BXK1 252 aaPredicted RBP19.37■□□□□ 0.69
VPS28-207ENST00000526977 ZNF576Q9H609 170 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 VPS37BQ9H9H4 285 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 EURLQ9NYK6 297 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 HS3ST4Q9Y661 456 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 CLUHO75153 1309 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 A0A1W2PRU2 124 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 SRRM3A6NNA2 597 aaPredicted RBP19.37■□□□□ 0.69
VPS28-207ENST00000526977 FOXO6A8MYZ6 492 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 CDH16O75309 829 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 RHOP08100 348 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 MBL2P11226 248 aaPredicted RBP19.37■□□□□ 0.69
VPS28-207ENST00000526977 DDX6P26196 483 aaKnown RBP eCLIP19.37■□□□□ 0.69
VPS28-207ENST00000526977 GCAP28676 217 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 SEC24CP53992 1094 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 LRIT3Q3SXY7 679 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 SYCP2LQ5T4T6 812 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 BZW1Q7L1Q6 419 aaKnown RBP19.37■□□□□ 0.69
VPS28-207ENST00000526977 TAOK1Q7L7X3 1001 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 CENPTQ96BT3 561 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 SELENOSQ9BQE4 189 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 HCFC1R1Q9NWW0 138 aa19.37■□□□□ 0.69
VPS28-207ENST00000526977 C5orf60A6NFR6 353 aa19.36■□□□□ 0.69
VPS28-207ENST00000526977 SRGAP2BP0DMP2 458 aa19.36■□□□□ 0.69
VPS28-207ENST00000526977 CHN1P15882 459 aa19.36■□□□□ 0.69
VPS28-207ENST00000526977 EPHB2P29323 1055 aa19.36■□□□□ 0.69
VPS28-207ENST00000526977 CBLBQ13191 982 aa19.36■□□□□ 0.69
VPS28-207ENST00000526977 MTM1Q13496 603 aa19.36■□□□□ 0.69
VPS28-207ENST00000526977 BBS9Q3SYG4 887 aa19.36■□□□□ 0.69
VPS28-207ENST00000526977 C4orf22Q6V702 233 aa19.36■□□□□ 0.69
VPS28-207ENST00000526977 CAPN12Q6ZSI9 719 aa19.36■□□□□ 0.69
VPS28-207ENST00000526977 CYP2S1Q96SQ9 504 aa19.36■□□□□ 0.69
VPS28-207ENST00000526977 NSUN3Q9H649 340 aaKnown RBP19.36■□□□□ 0.69
VPS28-207ENST00000526977 ETNK1Q9HBU6 452 aa19.36■□□□□ 0.69
VPS28-207ENST00000526977 PPANQ9NQ55 473 aaKnown RBP19.36■□□□□ 0.69
VPS28-207ENST00000526977 DZANK1Q9NVP4 752 aa19.36■□□□□ 0.69
VPS28-207ENST00000526977 TBK1Q9UHD2 729 aa19.36■□□□□ 0.69
VPS28-207ENST00000526977 EXOC1LA0A1B0GW35 172 aa19.35■□□□□ 0.69
VPS28-207ENST00000526977 HACD1B0YJ81 288 aa19.35■□□□□ 0.69
VPS28-207ENST00000526977 ZNF197O14709 1029 aa19.35■□□□□ 0.69
VPS28-207ENST00000526977 CREB1P16220 341 aa19.35■□□□□ 0.69
VPS28-207ENST00000526977 ERCC2P18074 760 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms