RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 TAF5Q15542 800 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 AAK1Q2M2I8 961 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 INO80DQ53TQ3 878 aaPredicted RBP4.34□□□□□ -1.71
CD44-219ENST00000525685 AWAT1Q58HT5 328 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 EPHA10Q5JZY3 1008 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 ZNF626Q68DY1 528 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 MIS18BP1Q6P0N0 1132 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 SYNE3Q6ZMZ3 975 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 NEK8Q86SG6 692 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 CHSY1Q86X52 802 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 CPXCR1Q8N123 301 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 AFG1LQ8WV93 481 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 TBC1D20Q96BZ9 403 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 MCRS1Q96EZ8 462 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 NAF1Q96HR8 494 aaKnown RBP4.34□□□□□ -1.71
CD44-219ENST00000525685 NUAK2Q9H093 628 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 VPS16Q9H269 839 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 PABPC3Q9H361 631 aaKnown RBP4.34□□□□□ -1.71
CD44-219ENST00000525685 ASNSD1Q9NWL6 643 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 ASIC5Q9NY37 505 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 TRPC5Q9UL62 973 aaPredicted RBP4.34□□□□□ -1.71
CD44-219ENST00000525685 MSH6P52701 1360 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 ABCC11Q96J66 1382 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 DCCP43146 1447 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 MST1RQ04912 1400 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 FAM135BQ49AJ0 1406 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 RALGAPBQ86X10 1494 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 ROBO1Q9Y6N7 1651 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 FMN2Q9NZ56 1722 aa4.34□□□□□ -1.71
CD44-219ENST00000525685 QRICH2Q9H0J4 1663 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 NHSL1Q5SYE7 1610 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 CLSPNQ9HAW4 1339 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 TCRBV5S1A1TA0A578 114 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 M0QYT0 321 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 IPO5O00410 1097 aaKnown RBP4.33□□□□□ -1.72
CD44-219ENST00000525685 PPP6CO00743 305 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 TP73O15350 636 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 PIP5K1CO60331 668 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 DHRS4L1P0CG22 281 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 PEPDP12955 493 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 TACR3P29371 465 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 MPGP29372 298 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 SERPINA4P29622 427 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 PCP4P48539 62 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 AGTR2P50052 363 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 RBM5P52756 815 aaKnown RBP eCLIP4.33□□□□□ -1.72
CD44-219ENST00000525685 RBM6P78332 1123 aaKnown RBP4.33□□□□□ -1.72
CD44-219ENST00000525685 SLC14A1Q13336 389 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 ZNF268Q14587 947 aaPredicted RBP4.33□□□□□ -1.72
CD44-219ENST00000525685 TAF12Q16514 161 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 FAM110CQ1W6H9 321 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 TBRG1Q3YBR2 411 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 GLE1Q53GS7 698 aaKnown RBP4.33□□□□□ -1.72
CD44-219ENST00000525685 CEP78Q5JTW2 689 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 JMJD6Q6NYC1 403 aaPredicted RBP4.33□□□□□ -1.72
CD44-219ENST00000525685 YTHDF3Q7Z739 585 aaKnown RBP4.33□□□□□ -1.72
CD44-219ENST00000525685 ANKRD18AQ8IVF6 992 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 UEVLDQ8IX04 471 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 SMAP1Q8IYB5 467 aaPredicted RBP4.33□□□□□ -1.72
CD44-219ENST00000525685 NKAPQ8N5F7 415 aaKnown RBP4.33□□□□□ -1.72
CD44-219ENST00000525685 MYRIPQ8NFW9 859 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 OR1N1Q8NGS0 311 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 OR6Y1Q8NGX8 325 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 CSGALNACT1Q8TDX6 532 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 OTUD7AQ8TE49 926 aaPredicted RBP4.33□□□□□ -1.72
CD44-219ENST00000525685 GLMPQ8WWB7 406 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 NPIPB3Q92617 1050 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 ZSCAN31Q96LW9 406 aaPredicted RBP4.33□□□□□ -1.72
CD44-219ENST00000525685 PAAF1Q9BRP4 392 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 ABHD14AQ9BUJ0 271 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 MECRQ9BV79 373 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 ELOVL1Q9BW60 279 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 CDCP1Q9H5V8 836 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 PRDM8Q9NQV8 689 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 RXFP3Q9NSD7 469 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 NDUFAF4Q9P032 175 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 DAPP1Q9UN19 280 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 BTBD3Q9Y2F9 522 aa4.33□□□□□ -1.72
CD44-219ENST00000525685 USP32Q8NFA0 1604 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 GPRASP1Q5JY77 1395 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 E7EVH7 732 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 H3BNC9 293 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 M0QZQ0 153 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 NKX2-8O15522 239 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 ALDOAP04075 364 aaKnown RBP4.32□□□□□ -1.72
CD44-219ENST00000525685 TUBB4AP04350 444 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 RXRAP19793 462 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 CCT5P48643 541 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 SUPT20HL1Q3ZLR7 823 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 MORN5Q5VZ52 161 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 LIN54Q6MZP7 749 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 C11orf87Q6NUJ2 197 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 C16orf89Q6UX73 402 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 KYAT3Q6YP21 454 aaKnown RBP4.32□□□□□ -1.72
CD44-219ENST00000525685 SYT13Q7L8C5 426 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 CNGA4Q8IV77 575 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 FTSJ3Q8IY81 847 aaKnown RBP4.32□□□□□ -1.72
CD44-219ENST00000525685 ADPRHL1Q8NDY3 354 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 OSR1Q8TAX0 266 aaPredicted RBP4.32□□□□□ -1.72
CD44-219ENST00000525685 RITA1Q96K30 269 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms