RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 CCDC134Q9H6E4 229 aa10.38□□□□□ -0.75
MCF2-209ENST00000520602 CYLDQ9NQC7 956 aa10.38□□□□□ -0.75
MCF2-209ENST00000520602 CHRAC1Q9NRG0 131 aa10.38□□□□□ -0.75
MCF2-209ENST00000520602 PABPN1LA6NDY0 278 aaKnown RBP10.38□□□□□ -0.75
MCF2-209ENST00000520602 A8MUI8 341 aa10.38□□□□□ -0.75
MCF2-209ENST00000520602 LYPLA1O75608 230 aaPredicted RBP10.38□□□□□ -0.75
MCF2-209ENST00000520602 ANP32DO95626 131 aa10.38□□□□□ -0.75
MCF2-209ENST00000520602 SLC2A3P11169 496 aa10.38□□□□□ -0.75
MCF2-209ENST00000520602 TRIM32Q13049 653 aa10.38□□□□□ -0.75
MCF2-209ENST00000520602 ART3Q13508 389 aa10.38□□□□□ -0.75
MCF2-209ENST00000520602 FSCBQ5H9T9 825 aa10.38□□□□□ -0.75
MCF2-209ENST00000520602 NOMO2Q5JPE7 1267 aa10.38□□□□□ -0.75
MCF2-209ENST00000520602 INTS6LQ5JSJ4 861 aaKnown RBP10.38□□□□□ -0.75
MCF2-209ENST00000520602 SPANXN3Q5MJ09 141 aa10.38□□□□□ -0.75
MCF2-209ENST00000520602 TRIM67Q6ZTA4 783 aa10.38□□□□□ -0.75
MCF2-209ENST00000520602 ACAD11Q709F0 780 aa10.38□□□□□ -0.75
MCF2-209ENST00000520602 PTAR1Q7Z6K3 402 aaPredicted RBP10.38□□□□□ -0.75
MCF2-209ENST00000520602 CAND1Q86VP6 1230 aaKnown RBP10.38□□□□□ -0.75
MCF2-209ENST00000520602 ATP6V0D2Q8N8Y2 350 aa10.38□□□□□ -0.75
MCF2-209ENST00000520602 CYP4F12Q9HCS2 524 aa10.38□□□□□ -0.75
MCF2-209ENST00000520602 PLLPQ9Y342 182 aa10.38□□□□□ -0.75
MCF2-209ENST00000520602 MCM3APO60318 1980 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 MBLAC1A4D2B0 266 aaPredicted RBP10.37□□□□□ -0.75
MCF2-209ENST00000520602 FAM72CH0Y354 149 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 PQBP1O60828 265 aaKnown RBP10.37□□□□□ -0.75
MCF2-209ENST00000520602 ENDOD1O94919 500 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 PDHA1P08559 390 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 PTPN4P29074 926 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 GRK4P32298 578 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 SLC5A3P53794 718 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 BNIP1Q12981 228 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 FAM72AQ5TYM5 149 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 MARC1Q5VT66 337 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 FAM72DQ6L9T8 149 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 ZNF280DQ6N043 979 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 LRRC8BQ6P9F7 803 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 DCLRE1AQ6PJP8 1040 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 FAM72BQ86X60 149 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 RASAL3Q86YV0 1011 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 EFHBQ8N7U6 833 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 TSPAN18Q96SJ8 248 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 TBC1D10AQ9BXI6 508 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 TRPV6Q9H1D0 765 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 TRPC7Q9HCX4 862 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 TMEM51Q9NW97 253 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 RCOR3Q9P2K3 495 aaPredicted RBP10.37□□□□□ -0.75
MCF2-209ENST00000520602 STOML1Q9UBI4 398 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 TYW5A2RUC4 315 aaKnown RBP10.37□□□□□ -0.75
MCF2-209ENST00000520602 E9PBE3 544 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 BUD23O43709 281 aaKnown RBP10.37□□□□□ -0.75
MCF2-209ENST00000520602 KLHL41O60662 606 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 ZNF189O75820 626 aaPredicted RBP10.37□□□□□ -0.75
MCF2-209ENST00000520602 DGKIO75912 1065 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 TOP3BO95985 862 aaKnown RBP10.37□□□□□ -0.75
MCF2-209ENST00000520602 RPLP2P05387 115 aaKnown RBP10.37□□□□□ -0.75
MCF2-209ENST00000520602 IL4RP24394 825 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 YWHAQP27348 245 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 ALDH7A1P49419 539 aaKnown RBP10.37□□□□□ -0.75
MCF2-209ENST00000520602 TEX44Q53QW1 395 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 UBXN11Q5T124 520 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 GRTP1Q5TC63 336 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 ALYREFQ86V81 257 aaKnown RBP10.37□□□□□ -0.75
MCF2-209ENST00000520602 SERPINB11Q96P15 392 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 NPY6RQ99463 290 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 CPNE1Q99829 537 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 ZNF395Q9H8N7 513 aaPredicted RBP10.37□□□□□ -0.75
MCF2-209ENST00000520602 THAP1Q9NVV9 213 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 FBXW11Q9UKB1 542 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 CHKBQ9Y259 395 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 DOCK1Q14185 1865 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.37□□□□□ -0.75
MCF2-209ENST00000520602 A0A1W2PQH9 124 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 BHMG1C9JSJ3 638 aaPredicted RBP10.37□□□□□ -0.75
MCF2-209ENST00000520602 AIM2O14862 343 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 MT-CYBP00156 380 aaPredicted RBP10.37□□□□□ -0.75
MCF2-209ENST00000520602 ALDH1A1P00352 501 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 VAV1P15498 845 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 PTPN3P26045 913 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 NPY2RP49146 381 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 CTBP1Q13363 440 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 EML3Q32P44 896 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 ZNF470Q6ECI4 717 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 GPRIN1Q7Z2K8 1008 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 SPATA6LQ8N4H0 392 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 TEX9Q8N6V9 391 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 SLC26A7Q8TE54 656 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 AGAP11Q8TF27 550 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 ACOT9Q9Y305 439 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 CITO14578 2027 aa10.37□□□□□ -0.75
MCF2-209ENST00000520602 ATXN2Q99700 1313 aaKnown RBP10.37□□□□□ -0.75
MCF2-209ENST00000520602 TBKBP1A7MCY6 615 aa10.36□□□□□ -0.75
MCF2-209ENST00000520602 HNRNPCL1O60812 293 aaKnown RBP10.36□□□□□ -0.75
MCF2-209ENST00000520602 STMN1P16949 149 aa10.36□□□□□ -0.75
MCF2-209ENST00000520602 ATXN3P54252 364 aaPredicted RBP10.36□□□□□ -0.75
MCF2-209ENST00000520602 NSUN2Q08J23 767 aaKnown RBP eCLIP10.36□□□□□ -0.75
MCF2-209ENST00000520602 ZBTB6Q15916 424 aa10.36□□□□□ -0.75
MCF2-209ENST00000520602 PDCD2Q16342 344 aaPredicted RBP10.36□□□□□ -0.75
MCF2-209ENST00000520602 RAP1GAP2Q684P5 730 aa10.36□□□□□ -0.75
MCF2-209ENST00000520602 TIGD7Q6NT04 549 aaPredicted RBP10.36□□□□□ -0.75
MCF2-209ENST00000520602 AGMOQ6ZNB7 445 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms