RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 XIRP2A4UGR9 3374 aa7.57□□□□□ -1.2
USP53-206ENST00000510737 RRP9O43818 475 aaKnown RBP7.57□□□□□ -1.2
USP53-206ENST00000510737 OAZ2O95190 189 aa7.57□□□□□ -1.2
USP53-206ENST00000510737 SLC7A1P30825 629 aa7.57□□□□□ -1.2
USP53-206ENST00000510737 ITGA8P53708 1063 aa7.57□□□□□ -1.2
USP53-206ENST00000510737 CFHR3Q02985 330 aa7.57□□□□□ -1.2
USP53-206ENST00000510737 SHHQ15465 462 aa7.57□□□□□ -1.2
USP53-206ENST00000510737 PTPROQ16827 1216 aa7.57□□□□□ -1.2
USP53-206ENST00000510737 ANKRD23Q86SG2 305 aa7.57□□□□□ -1.2
USP53-206ENST00000510737 C22orf23Q9BZE7 217 aa7.57□□□□□ -1.2
USP53-206ENST00000510737 ZBTB40Q9NUA8 1239 aa7.57□□□□□ -1.2
USP53-206ENST00000510737 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.57□□□□□ -1.2
USP53-206ENST00000510737 CLIC1O00299 241 aa7.56□□□□□ -1.2
USP53-206ENST00000510737 AKAP10O43572 662 aa7.56□□□□□ -1.2
USP53-206ENST00000510737 PTDSS1P48651 473 aaKnown RBP7.56□□□□□ -1.2
USP53-206ENST00000510737 PPIL2Q13356 520 aa7.56□□□□□ -1.2
USP53-206ENST00000510737 TTF1Q15361 905 aaPredicted RBP7.56□□□□□ -1.2
USP53-206ENST00000510737 LRRC26Q2I0M4 334 aa7.56□□□□□ -1.2
USP53-206ENST00000510737 KIAA1161Q6NSJ0 714 aa7.56□□□□□ -1.2
USP53-206ENST00000510737 ANKRD18AQ8IVF6 992 aa7.56□□□□□ -1.2
USP53-206ENST00000510737 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.56□□□□□ -1.2
USP53-206ENST00000510737 STAG1Q8WVM7 1258 aa7.56□□□□□ -1.2
USP53-206ENST00000510737 PPP1R9BQ96SB3 815 aa7.56□□□□□ -1.2
USP53-206ENST00000510737 C1QTNF1Q9BXJ1 281 aa7.56□□□□□ -1.2
USP53-206ENST00000510737 TMEM39BQ9GZU3 492 aa7.56□□□□□ -1.2
USP53-206ENST00000510737 EPHX3Q9H6B9 360 aa7.56□□□□□ -1.2
USP53-206ENST00000510737 POT1Q9NUX5 634 aa7.56□□□□□ -1.2
USP53-206ENST00000510737 ZNF180Q9UJW8 692 aa7.56□□□□□ -1.2
USP53-206ENST00000510737 OGDHLQ9ULD0 1010 aa7.56□□□□□ -1.2
USP53-206ENST00000510737 RIMKLBQ9ULI2 386 aa7.56□□□□□ -1.2
USP53-206ENST00000510737 TRIM43BA6NCK2 446 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 H3BNX3 289 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 PYCARD-AS1I3L0S3 204 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 RGS10O43665 173 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 TMPRSS11DO60235 418 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 FGF2P09038 288 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 U2AF1L5P0DN76 240 aaPredicted RBP7.55□□□□□ -1.2
USP53-206ENST00000510737 TNFRSF1BP20333 461 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 SUMO3P55854 103 aaPredicted RBP7.55□□□□□ -1.2
USP53-206ENST00000510737 U2AF1Q01081 240 aaKnown RBP eCLIP7.55□□□□□ -1.2
USP53-206ENST00000510737 MFSD13AQ14CX5 517 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 CCDC152Q4G0S7 254 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 C9orf50Q5SZB4 431 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 MAEAQ7L5Y9 396 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 ANKRD13BQ86YJ7 626 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 PELI3Q8N2H9 469 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 ACRBPQ8NEB7 543 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 TRIM43Q96BQ3 446 aaPredicted RBP7.55□□□□□ -1.2
USP53-206ENST00000510737 ZFYVE19Q96K21 471 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 HS6ST2Q96MM7 605 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 TDRD3Q9H7E2 651 aaKnown RBP7.55□□□□□ -1.2
USP53-206ENST00000510737 CD209Q9NNX6 404 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 SQORQ9Y6N5 450 aa7.55□□□□□ -1.2
USP53-206ENST00000510737 LOC102723971A0A1B0GUV8 181 aa7.54□□□□□ -1.2
USP53-206ENST00000510737 TCP10L2B9ZVM9 353 aa7.54□□□□□ -1.2
USP53-206ENST00000510737 CRYABP02511 175 aaKnown RBP7.54□□□□□ -1.2
USP53-206ENST00000510737 HSPA5P11021 654 aaKnown RBP7.54□□□□□ -1.2
USP53-206ENST00000510737 ME1P48163 572 aa7.54□□□□□ -1.2
USP53-206ENST00000510737 RAB27AP51159 221 aa7.54□□□□□ -1.2
USP53-206ENST00000510737 RBM5P52756 815 aaKnown RBP eCLIP7.54□□□□□ -1.2
USP53-206ENST00000510737 RPS13P62277 151 aaKnown RBP7.54□□□□□ -1.2
USP53-206ENST00000510737 PPATQ06203 517 aa7.54□□□□□ -1.2
USP53-206ENST00000510737 MTX1Q13505 466 aa7.54□□□□□ -1.2
USP53-206ENST00000510737 INSCQ1MX18 579 aa7.54□□□□□ -1.2
USP53-206ENST00000510737 ZNF750Q32MQ0 723 aa7.54□□□□□ -1.2
USP53-206ENST00000510737 ARFGAP1Q8N6T3 406 aa7.54□□□□□ -1.2
USP53-206ENST00000510737 LBHD1Q9BQE6 289 aaPredicted RBP7.54□□□□□ -1.2
USP53-206ENST00000510737 BRINP2Q9C0B6 783 aa7.54□□□□□ -1.2
USP53-206ENST00000510737 MLXIPLQ9NP71 852 aa7.54□□□□□ -1.2
USP53-206ENST00000510737 HS3ST3B1Q9Y662 390 aa7.54□□□□□ -1.2
USP53-206ENST00000510737 BDP1A6H8Y1 2624 aa7.53□□□□□ -1.2
USP53-206ENST00000510737 MBD3L4A6NDZ8 208 aaPredicted RBP7.53□□□□□ -1.2
USP53-206ENST00000510737 MBD3L3A6NE82 208 aaPredicted RBP7.53□□□□□ -1.2
USP53-206ENST00000510737 PRR23D1E9PI22 279 aaPredicted RBP7.53□□□□□ -1.2
USP53-206ENST00000510737 TNPO2O14787 897 aaKnown RBP7.53□□□□□ -1.2
USP53-206ENST00000510737 CCP110O43303 1012 aa7.53□□□□□ -1.2
USP53-206ENST00000510737 PARP1P09874 1014 aaKnown RBP7.53□□□□□ -1.2
USP53-206ENST00000510737 PRR23D2P0DMB1 279 aaPredicted RBP7.53□□□□□ -1.2
USP53-206ENST00000510737 GATMP50440 423 aa7.53□□□□□ -1.2
USP53-206ENST00000510737 DENND2CQ68D51 928 aa7.53□□□□□ -1.2
USP53-206ENST00000510737 ANO7Q6IWH7 933 aa7.53□□□□□ -1.2
USP53-206ENST00000510737 APOA5Q6Q788 366 aa7.53□□□□□ -1.2
USP53-206ENST00000510737 VSTM1Q6UX27 236 aa7.53□□□□□ -1.2
USP53-206ENST00000510737 C12orf76Q8N812 135 aaPredicted RBP7.53□□□□□ -1.2
USP53-206ENST00000510737 C11orf44Q8N8P7 122 aa7.53□□□□□ -1.2
USP53-206ENST00000510737 PPM1EQ8WY54 764 aa7.53□□□□□ -1.2
USP53-206ENST00000510737 TRIM36Q9NQ86 728 aa7.53□□□□□ -1.2
USP53-206ENST00000510737 SACM1LQ9NTJ5 587 aa7.53□□□□□ -1.2
USP53-206ENST00000510737 DDX60LQ5H9U9 1706 aaKnown RBP7.52□□□□□ -1.2
USP53-206ENST00000510737 SNAP23O00161 211 aa7.52□□□□□ -1.21
USP53-206ENST00000510737 SMAD6O43541 496 aaKnown RBP7.52□□□□□ -1.21
USP53-206ENST00000510737 NTSR1P30989 418 aa7.52□□□□□ -1.21
USP53-206ENST00000510737 PGDP52209 483 aa7.52□□□□□ -1.21
USP53-206ENST00000510737 GPC5P78333 572 aa7.52□□□□□ -1.21
USP53-206ENST00000510737 MRPS5P82675 430 aaKnown RBP7.52□□□□□ -1.21
USP53-206ENST00000510737 TNFAIP1Q13829 316 aa7.52□□□□□ -1.21
USP53-206ENST00000510737 ERV3-1Q14264 604 aa7.52□□□□□ -1.21
USP53-206ENST00000510737 C3orf38Q5JPI3 329 aa7.52□□□□□ -1.21
USP53-206ENST00000510737 COLCA1Q6ZS62 124 aa7.52□□□□□ -1.21
USP53-206ENST00000510737 USP49Q70CQ1 688 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms