RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 SLC2A11Q9BYW1 496 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 NOL6Q9H6R4 1146 aaKnown RBP7.4□□□□□ -1.22
NUP54-204ENST00000506098 LRRC19Q9H756 370 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 NDFIP2Q9NV92 336 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 DUS2Q9NX74 493 aaKnown RBP7.4□□□□□ -1.22
NUP54-204ENST00000506098 DTLQ9NZJ0 730 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 FBXO10Q9UK96 956 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 FAM50BQ9Y247 325 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 DRG1Q9Y295 367 aaKnown RBP7.4□□□□□ -1.22
NUP54-204ENST00000506098 ZNF106Q9H2Y7 1883 aaKnown RBP7.4□□□□□ -1.23
NUP54-204ENST00000506098 PLXND1Q9Y4D7 1925 aa7.4□□□□□ -1.23
NUP54-204ENST00000506098 EML5Q05BV3 1969 aa7.4□□□□□ -1.23
NUP54-204ENST00000506098 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 CXorf51AA0A1B0GTR3 108 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 ILVBLA1L0T0 632 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 TYW5A2RUC4 315 aaKnown RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 HACD1B0YJ81 288 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 LOC730098B7Z3J9 87 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 ARNTLO00327 626 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 KRIT1O00522 736 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 TRDMT1O14717 391 aaKnown RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 HOXC11O43248 304 aaPredicted RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 MFSD11O43934 449 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 TSPAN3O60637 253 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 PHF2O75151 1096 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 LUC7L3O95232 432 aaKnown RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 NFATC1O95644 943 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 CYBBP04839 570 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 CYP17A1P05093 508 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 PECAM1P16284 738 aaPredicted RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 OR1E1P30953 314 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 PLK1P53350 603 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 VCPP55072 806 aaKnown RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 OXCT1P55809 520 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 OTUD4Q01804 1114 aaKnown RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 GALNT2Q10471 571 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 ZNF177Q13360 481 aaPredicted RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 SLC12A1Q13621 1099 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 LLGL1Q15334 1064 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 DHCR24Q15392 516 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 OASLQ15646 514 aaKnown RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 GAB4Q2WGN9 574 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 LY6G5CQ5SRR4 150 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 PTCRAQ6ISU1 281 aaPredicted RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 CXorf57Q6NSI4 855 aaKnown RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 RWDD4Q6NW29 188 aaKnown RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 NPNTQ6UXI9 565 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 KIAA0907Q7Z7F0 614 aaPredicted RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 CFAP52Q8N1V2 620 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 NPWQ8N729 165 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 ZNF557Q8N988 423 aaPredicted RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 MNS1Q8NEH6 495 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 SPATA4Q8NEY3 305 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 ACTL9Q8TC94 416 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 DDI1Q8WTU0 396 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 SLCO2A1Q92959 643 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 ATP2A3Q93084 1043 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 FATE1Q969F0 183 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 NKD2Q969F2 451 aaPredicted RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 HDAC11Q96DB2 347 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 ALG14Q96F25 216 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 LMLNQ96KR4 655 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 TSGA13Q96PP4 275 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 RPP25Q9BUL9 199 aaKnown RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 TRMT61BQ9BVS5 477 aaKnown RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 AP1M1Q9BXS5 423 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 BRD8Q9H0E9 1235 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 MAGEH1Q9H213 219 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 TRPV5Q9NQA5 729 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 HPS4Q9NQG7 708 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 SMARCAL1Q9NZC9 954 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 IGSF9Q9P2J2 1179 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 SAE1Q9UBE0 346 aaPredicted RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 PCYOX1Q9UHG3 505 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 R3HDM2Q9Y2K5 976 aaKnown RBP7.39□□□□□ -1.23
NUP54-204ENST00000506098 MFHAS1Q9Y4C4 1052 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 OR51B4Q9Y5P0 310 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 WNT6Q9Y6F9 365 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 NUMBLQ9Y6R0 609 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 PIKFYVEQ9Y2I7 2098 aa7.39□□□□□ -1.23
NUP54-204ENST00000506098 GOLGA6L10A0A0M3HER8 536 aa7.38□□□□□ -1.23
NUP54-204ENST00000506098 BCLAF3A2AJT9 711 aaKnown RBP7.38□□□□□ -1.23
NUP54-204ENST00000506098 CTAGE15A4D2H0 777 aa7.38□□□□□ -1.23
NUP54-204ENST00000506098 ARHGAP42A6NI28 874 aa7.38□□□□□ -1.23
NUP54-204ENST00000506098 H0Y626 953 aa7.38□□□□□ -1.23
NUP54-204ENST00000506098 SCAMP3O14828 347 aaKnown RBP7.38□□□□□ -1.23
NUP54-204ENST00000506098 LIASO43766 372 aa7.38□□□□□ -1.23
NUP54-204ENST00000506098 CACNG3O60359 315 aa7.38□□□□□ -1.23
NUP54-204ENST00000506098 ZNF189O75820 626 aaPredicted RBP7.38□□□□□ -1.23
NUP54-204ENST00000506098 ADH1CP00326 375 aa7.38□□□□□ -1.23
NUP54-204ENST00000506098 ITGAVP06756 1048 aa7.38□□□□□ -1.23
NUP54-204ENST00000506098 CTAGE8P0CG41 777 aa7.38□□□□□ -1.23
NUP54-204ENST00000506098 RBP3P10745 1247 aa7.38□□□□□ -1.23
NUP54-204ENST00000506098 TYRP14679 529 aa7.38□□□□□ -1.23
NUP54-204ENST00000506098 MX2P20592 715 aa7.38□□□□□ -1.23
NUP54-204ENST00000506098 CCNCP24863 283 aa7.38□□□□□ -1.23
NUP54-204ENST00000506098 CHRNA3P32297 505 aa7.38□□□□□ -1.23
NUP54-204ENST00000506098 ETFBP38117 255 aa7.38□□□□□ -1.23
NUP54-204ENST00000506098 COILP38432 576 aaPredicted RBP7.38□□□□□ -1.23
NUP54-204ENST00000506098 GARSP41250 739 aaKnown RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms