RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 PDIA3P30101 505 aaKnown RBP7.1□□□□□ -1.27
VIM-207ENST00000495528 RNASE9P60153 205 aaKnown RBP7.1□□□□□ -1.27
VIM-207ENST00000495528 TLE1Q04724 770 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 ITIH3Q06033 890 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 SMC1AQ14683 1233 aaKnown RBP7.1□□□□□ -1.27
VIM-207ENST00000495528 UBXN2BQ14CS0 331 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 MLC1Q15049 377 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 ATAT1Q5SQI0 421 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 CES5AQ6NT32 575 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 APOA5Q6Q788 366 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 ECHDC2Q86YB7 292 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 TMPRSS6Q8IU80 811 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 UBALD2Q8IYN6 164 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 SLC39A11Q8N1S5 342 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 MYO1HQ8N1T3 1032 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 LRRC71Q8N4P6 559 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 SH2D3CQ8N5H7 860 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 CAMKK1Q8N5S9 505 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 LINC01465Q8N7H1 131 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 C12orf76Q8N812 135 aaPredicted RBP7.1□□□□□ -1.27
VIM-207ENST00000495528 NECAB1Q8N987 351 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 C3orf20Q8ND61 904 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 CPT1CQ8TCG5 803 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 CRYGNQ8WXF5 182 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 CASP10Q92851 521 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 SNX21Q969T3 373 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 ZNF558Q96NG5 402 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 AIFM3Q96NN9 605 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 FAM193BQ96PV7 902 aaPredicted RBP7.1□□□□□ -1.27
VIM-207ENST00000495528 ZNF577Q9BSK1 485 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 GSTO2Q9H4Y5 243 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 RBM28Q9NW13 759 aaKnown RBP7.1□□□□□ -1.27
VIM-207ENST00000495528 BARHL2Q9NY43 387 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 GABBR1Q9UBS5 961 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 PCDHA10Q9Y5I2 948 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 PLXNA4Q9HCM2 1894 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 KIAA1671Q9BY89 1806 aa7.1□□□□□ -1.27
VIM-207ENST00000495528 ZFHX2Q9C0A1 2572 aaPredicted RBP7.09□□□□□ -1.27
VIM-207ENST00000495528 A0A0U1RQF3 1178 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 MAGEB2O15479 319 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 ZBTB43O43298 467 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 CSDE1O75534 798 aaKnown RBP7.09□□□□□ -1.27
VIM-207ENST00000495528 LARGE1O95461 756 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 ALDH2P05091 517 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 CYP3A4P08684 503 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 C1SP09871 688 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 MALP21145 153 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 CA8P35219 290 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 PPM1AP35813 382 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 MCM2P49736 904 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 METAP2P50579 478 aaKnown RBP eCLIP7.09□□□□□ -1.27
VIM-207ENST00000495528 MAP2K6P52564 334 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 DGCR2P98153 550 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 BECN1Q14457 450 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 ME3Q16798 604 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 CLLU1OSQ5K130 101 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 RARS2Q5T160 578 aaKnown RBP7.09□□□□□ -1.27
VIM-207ENST00000495528 NAIF1Q69YI7 327 aaPredicted RBP7.09□□□□□ -1.27
VIM-207ENST00000495528 DRICH1Q6PGQ1 229 aaPredicted RBP7.09□□□□□ -1.27
VIM-207ENST00000495528 HTR3DQ70Z44 454 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 HSCBQ8IWL3 235 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 LRRC43Q8N309 656 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 FBXL16Q8N461 479 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 ZNF274Q96GC6 653 aaPredicted RBP7.09□□□□□ -1.27
VIM-207ENST00000495528 ZSCAN31Q96LW9 406 aaPredicted RBP7.09□□□□□ -1.27
VIM-207ENST00000495528 NECTIN4Q96NY8 510 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 PLEKHG4BQ96PX9 1271 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 KRTAP4-2Q9BYR5 136 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 AGXT2Q9BYV1 514 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 KMT5AQ9NQR1 393 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 TBC1D22BQ9NU19 505 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 TRPM5Q9NZQ8 1165 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 CALCOCO1Q9P1Z2 691 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 USP34Q70CQ2 3546 aa7.09□□□□□ -1.27
VIM-207ENST00000495528 FNDC1Q4ZHG4 1894 aaPredicted RBP7.09□□□□□ -1.28
VIM-207ENST00000495528 CDHR4A6H8M9 788 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 PRR23AA6NEV1 266 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 hCG_1984214I3L0E3 225 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 EDIL3O43854 480 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 PFKFB2O60825 505 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 DARSP14868 501 aaKnown RBP7.08□□□□□ -1.28
VIM-207ENST00000495528 EPCAMP16422 314 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 TMOD1P28289 359 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 NBL1P41271 181 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 MTHFRP42898 656 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 ALDH7A1P49419 539 aaKnown RBP7.08□□□□□ -1.28
VIM-207ENST00000495528 GPC3P51654 580 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 EVCP57679 992 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 KRTAP10-2P60368 255 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 GTF2H3Q13889 308 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 PFKFB3Q16875 520 aaPredicted RBP7.08□□□□□ -1.28
VIM-207ENST00000495528 PRR16Q569H4 304 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 CXorf57Q6NSI4 855 aaKnown RBP7.08□□□□□ -1.28
VIM-207ENST00000495528 C14orf80Q86SX3 495 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 TMEM173Q86WV6 379 aaPredicted RBP7.08□□□□□ -1.28
VIM-207ENST00000495528 CCDC83Q8IWF9 413 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 SMAP1Q8IYB5 467 aaPredicted RBP7.08□□□□□ -1.28
VIM-207ENST00000495528 VPS52Q8N1B4 723 aa7.08□□□□□ -1.28
VIM-207ENST00000495528 ZNF713Q8N859 430 aaPredicted RBP7.08□□□□□ -1.28
VIM-207ENST00000495528 PPP1R35Q8TAP8 253 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms