RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	ST8SIA6	P61647	398 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	ECT2L	Q008S8	904 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	ZBTB16	Q05516	673 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	NME3	Q13232	169 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	SLC14A1	Q13336	389 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	TRIP6	Q15654	476 aa	Known RBP	12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	TTC31	Q49AM3	519 aa	Predicted RBP	12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	VWA3B	Q502W6	1294 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	OR6B2	Q6IFH4	312 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	NCEH1	Q6PIU2	408 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	C11orf57	Q6ZUT1	292 aa	Predicted RBP	12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	SLC26A9	Q7LBE3	791 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	RAB44	Q7Z6P3	723 aa	Predicted RBP	12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	ZNF683	Q8IZ20	524 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	ZNF557	Q8N988	423 aa	Predicted RBP	12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	SLC6A18	Q96N87	628 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	TUBGCP2	Q9BSJ2	902 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	TRIM62	Q9BVG3	475 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	NAA15	Q9BXJ9	866 aa	Known RBP	12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	ZDHHC5	Q9C0B5	715 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	PCED1A	Q9H1Q7	454 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	TM7SF3	Q9NS93	570 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	TOR4A	Q9NXH8	423 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	FBXL12	Q9NXK8	326 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	SUN2	Q9UH99	717 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	SARDH	Q9UL12	918 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	ZMIZ1	Q9ULJ6	1067 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	VANGL2	Q9ULK5	521 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	HS3ST4	Q9Y661	456 aa		12.01	□□□□□ -0.49
VTI1A-208	ENST00000494728	MYLK	Q15746	1914 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	EDDM13	A0A1B0GTR0	161 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	FAM47DP	A6NHR8	397 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	RNF103	O00237	685 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	PAGE1	O75459	146 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	RNASEH2A	O75792	299 aa	Known RBP	12	□□□□□ -0.49
VTI1A-208	ENST00000494728	CNTN5	O94779	1100 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	ADCY5	O95622	1261 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	CER1	O95813	267 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	WNT1	P04628	370 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	SRPRA	P08240	638 aa	Known RBP	12	□□□□□ -0.49
VTI1A-208	ENST00000494728	CYP11B1	P15538	503 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	CCR1	P32246	355 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	CDH5	P33151	784 aa	Predicted RBP	12	□□□□□ -0.49
VTI1A-208	ENST00000494728	DRD3	P35462	400 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	GRIA4	P48058	902 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	KLK7	P49862	253 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	AFF3	P51826	1226 aa	Known RBP	12	□□□□□ -0.49
VTI1A-208	ENST00000494728	GALC	P54803	685 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	PPP2CB	P62714	309 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	PPP2CA	P67775	309 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	CDK17	Q00537	523 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	IL9R	Q01113	521 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	SLC6A3	Q01959	620 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	PTK2	Q05397	1052 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	AUH	Q13825	339 aa	Known RBP	12	□□□□□ -0.49
VTI1A-208	ENST00000494728	RAPGEF1	Q13905	1077 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	DRAP1	Q14919	205 aa	Predicted RBP	12	□□□□□ -0.49
VTI1A-208	ENST00000494728	TPD52L1	Q16890	204 aa	Predicted RBP	12	□□□□□ -0.49
VTI1A-208	ENST00000494728	TAF3	Q5VWG9	929 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	KIAA0895L	Q68EN5	471 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	USP30	Q70CQ3	517 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	NOP9	Q86U38	636 aa	Known RBP	12	□□□□□ -0.49
VTI1A-208	ENST00000494728	SLCO6A1	Q86UG4	719 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	ATP6V0D2	Q8N8Y2	350 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	KDM1B	Q8NB78	822 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	FRS2	Q8WU20	508 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	FAM81B	Q96LP2	452 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	RPRD1A	Q96P16	312 aa	Predicted RBP	12	□□□□□ -0.49
VTI1A-208	ENST00000494728	NPY6R	Q99463	290 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	NUP62CL	Q9H1M0	184 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	NEUROG2	Q9H2A3	272 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	SGK2	Q9HBY8	427 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	KIAA1522	Q9P206	1035 aa	Predicted RBP	12	□□□□□ -0.49
VTI1A-208	ENST00000494728	ANKRD6	Q9Y2G4	727 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	NEUROG3	Q9Y4Z2	214 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	CEP83	Q9Y592	693 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728	OR51B4	Q9Y5P0	310 aa		12	□□□□□ -0.49
VTI1A-208	ENST00000494728		H0Y8X5	98 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728		M0QYT0	321 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	HAX1	O00165	279 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	EPHB6	O15197	1021 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	ZNF883	P0CG24	379 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	ABCB4	P21439	1286 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	CD27	P26842	260 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	SLC8A1	P32418	973 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	KRT9	P35527	623 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	FLT3	P36888	993 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	CTSK	P43235	329 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	PLK1	P53350	603 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	ADPRH	P54922	357 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	RAB6C	Q53S08	254 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	ALF	Q53S48	1182 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	EFHC1	Q5JVL4	640 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	KLHDC7A	Q5VTJ3	777 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	TTC39B	Q5VTQ0	682 aa	Predicted RBP	11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	DBX2	Q6ZNG2	339 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	XYLT1	Q86Y38	959 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	KDF1	Q8NAX2	398 aa	Predicted RBP	11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	ZNF397	Q8NF99	534 aa	Predicted RBP	11.99	□□□□□ -0.49

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