RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 IFITM10A6NMD0 228 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 PARNO95453 639 aaKnown RBP3.42□□□□□ -1.86
CPSF3-205ENST00000489629 CYP1A2P05177 515 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 GRK5P34947 590 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 SLC16A2P36021 539 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 RBM6P78332 1123 aaKnown RBP3.42□□□□□ -1.86
CPSF3-205ENST00000489629 RHAGQ02094 409 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 ZBTB16Q05516 673 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 GALNT3Q14435 633 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 DUSP6Q16828 381 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 FAM83HQ6ZRV2 1179 aaPredicted RBP3.42□□□□□ -1.86
CPSF3-205ENST00000489629 C11orf96Q7Z7L8 435 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 SLC25A41Q8N5S1 370 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 LMO3Q8TAP4 145 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 CLEC4CQ8WTT0 213 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 WDR60Q8WVS4 1066 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 LMLNQ96KR4 655 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 MECRQ9BV79 373 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 FRMD8Q9BZ67 464 aaPredicted RBP3.42□□□□□ -1.86
CPSF3-205ENST00000489629 VPS33BQ9H267 617 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 FBXO4Q9UKT5 387 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 SLC39A10Q9ULF5 831 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 NFU1Q9UMS0 254 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 PCDHGB2Q9Y5G2 931 aa3.42□□□□□ -1.86
CPSF3-205ENST00000489629 COPG1Q9Y678 874 aaKnown RBP3.42□□□□□ -1.86
CPSF3-205ENST00000489629 I6L893 689 aaPredicted RBP3.41□□□□□ -1.86
CPSF3-205ENST00000489629 PIP5K1BO14986 540 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 PAPSS2O95340 614 aaPredicted RBP3.41□□□□□ -1.86
CPSF3-205ENST00000489629 HOXD3P31249 432 aaPredicted RBP3.41□□□□□ -1.86
CPSF3-205ENST00000489629 TNFSF8P32971 234 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 STAT1P42224 750 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 KCNJ4P48050 445 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 PCYT1AP49585 367 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 ENTPD1P49961 510 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 ALDH18A1P54886 795 aaKnown RBP3.41□□□□□ -1.86
CPSF3-205ENST00000489629 GPR18Q14330 331 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 LONRF1Q17RB8 773 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 ALG10Q5BKT4 473 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 ZNF628Q5EBL2 1059 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 ALG10BQ5I7T1 473 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 DCAF12L2Q5VW00 463 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 RINT1Q6NUQ1 792 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 MORC1Q86VD1 984 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 NRSN1Q8IZ57 195 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 CADM3Q8N126 398 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 FAM110DQ8TAY7 271 aaPredicted RBP3.41□□□□□ -1.86
CPSF3-205ENST00000489629 KIAA1191Q96A73 305 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 ZNF419Q96HQ0 510 aaPredicted RBP3.41□□□□□ -1.86
CPSF3-205ENST00000489629 NPAS1Q99742 590 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 TP63Q9H3D4 680 aaPredicted RBP3.41□□□□□ -1.86
CPSF3-205ENST00000489629 CCDC134Q9H6E4 229 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 NCKIPSDQ9NZQ3 722 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 FNIP2Q9P278 1114 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 CHPF2Q9P2E5 772 aa3.41□□□□□ -1.86
CPSF3-205ENST00000489629 MAGED2Q9UNF1 606 aaPredicted RBP3.41□□□□□ -1.86
CPSF3-205ENST00000489629 SLC38A8A6NNN8 435 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 KIF28PB7ZC32 967 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 KIF3BO15066 747 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 DNPH1O43598 174 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 CHRNB2P17787 502 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 CHRNA5P30532 468 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 ZP1P60852 638 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 PKP1Q13835 747 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 HLTFQ14527 1009 aaKnown RBP eCLIP3.4□□□□□ -1.87
CPSF3-205ENST00000489629 SHBQ15464 509 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 TRIM60Q495X7 471 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 ARL13AQ5H913 290 aaPredicted RBP3.4□□□□□ -1.87
CPSF3-205ENST00000489629 FNBP1LQ5T0N5 605 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 VWA5B1Q5TIE3 1220 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 AAGABQ6PD74 315 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 KLBQ86Z14 1044 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 FAM217AQ8IXS0 508 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 TMEM217Q8N7C4 229 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 PARD3BQ8TEW8 1205 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 DNASE2BQ8WZ79 361 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 SEZ6LQ9BYH1 1024 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 B3GNT4Q9C0J1 378 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 CERS4Q9HA82 394 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 PLEKHB1Q9UF11 243 aaPredicted RBP3.4□□□□□ -1.87
CPSF3-205ENST00000489629 PKP3Q9Y446 797 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 CEP83Q9Y592 693 aa3.4□□□□□ -1.87
CPSF3-205ENST00000489629 TBC1D3DA0A087WVF3 549 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 TBC1D3IA0A087WXS9 549 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 TBC1D3EA0A087X179 549 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 TBC1D3KA0A087X1G2 549 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 TBC1D3BA6NDS4 549 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 FAM90A18PA6NE21 464 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 TBC1D3FA6NER0 549 aaPredicted RBP3.39□□□□□ -1.87
CPSF3-205ENST00000489629 FAM90A16PA6NEW6 464 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 FAM90A9PA6NNJ1 464 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 FAM90A5PA8MXJ8 464 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 TBC1D3LB9A6J9 549 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 PPP1R3DO95685 299 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 FAM90A15PP0C7V4 464 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 FAM90A14PP0C7W9 464 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 TBC1D3HP0C7X1 549 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 PMS2P54278 862 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 AK2P54819 239 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 RRP1P56182 461 aaKnown RBP3.39□□□□□ -1.87
CPSF3-205ENST00000489629 SF3A3Q12874 501 aaKnown RBP eCLIP3.39□□□□□ -1.871e-7■■■□□ 16.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms