RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 HYIQ5T013 277 aa11.97□□□□□ -0.49
HDAC6-233ENST00000489352 C9orf64Q5T6V5 341 aa11.97□□□□□ -0.49
HDAC6-233ENST00000489352 RNF219Q5W0B1 726 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-233ENST00000489352 DCP2Q8IU60 420 aaKnown RBP11.97□□□□□ -0.49
HDAC6-233ENST00000489352 SLC34A3Q8N130 599 aa11.97□□□□□ -0.49
HDAC6-233ENST00000489352 ZNF557Q8N988 423 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-233ENST00000489352 ZSWIM2Q8NEG5 633 aa11.97□□□□□ -0.49
HDAC6-233ENST00000489352 ZNF548Q8NEK5 533 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-233ENST00000489352 OR13H1Q8NG92 308 aa11.97□□□□□ -0.49
HDAC6-233ENST00000489352 OR5B17Q8NGF7 314 aa11.97□□□□□ -0.49
HDAC6-233ENST00000489352 USP7Q93009 1102 aa11.97□□□□□ -0.49
HDAC6-233ENST00000489352 HVCN1Q96D96 273 aa11.97□□□□□ -0.49
HDAC6-233ENST00000489352 ACCSQ96QU6 501 aa11.97□□□□□ -0.49
HDAC6-233ENST00000489352 SMOQ99835 787 aa11.97□□□□□ -0.49
HDAC6-233ENST00000489352 FOXP1Q9H334 677 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-233ENST00000489352 PRDM8Q9NQV8 689 aa11.97□□□□□ -0.49
HDAC6-233ENST00000489352 IPO11Q9UI26 975 aaKnown RBP11.97□□□□□ -0.49
HDAC6-233ENST00000489352 LOXL2Q9Y4K0 774 aa11.97□□□□□ -0.49
HDAC6-233ENST00000489352 PCDHA5Q9Y5H7 936 aa11.97□□□□□ -0.49
HDAC6-233ENST00000489352 CSNK1G3Q9Y6M4 447 aa11.97□□□□□ -0.49
HDAC6-233ENST00000489352 WIPF3A6NGB9 483 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 ZNF891A8MT65 544 aaPredicted RBP11.96□□□□□ -0.49
HDAC6-233ENST00000489352 C10orf142B7Z368 130 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 STMND1H3BQB6 276 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 SLC7A4O43246 635 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 AQP9O43315 295 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 BEST1O76090 585 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 REC8O95072 547 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 RNF224P0DH78 156 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 ITIH1P19827 911 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 GARTP22102 1010 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 TRPC3Q13507 836 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 ESRP1Q6NXG1 681 aaKnown RBP11.96□□□□□ -0.49
HDAC6-233ENST00000489352 PAQR9Q6ZVX9 377 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 KIAA0907Q7Z7F0 614 aaPredicted RBP11.96□□□□□ -0.49
HDAC6-233ENST00000489352 B3GNT8Q7Z7M8 397 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 DTX1Q86Y01 620 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 CCDC117Q8IWD4 279 aaPredicted RBP11.96□□□□□ -0.49
HDAC6-233ENST00000489352 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.96□□□□□ -0.49
HDAC6-233ENST00000489352 LMX1AQ8TE12 382 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 APOBEC4Q8WW27 367 aaKnown RBP11.96□□□□□ -0.49
HDAC6-233ENST00000489352 TMEM159Q96B96 161 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 SRRTQ9BXP5 876 aaKnown RBP11.96□□□□□ -0.49
HDAC6-233ENST00000489352 TM6SF1Q9BZW5 370 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 ST6GALNAC4Q9H4F1 302 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 PCIF1Q9H4Z3 704 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 MARCH2Q9P0N8 246 aa11.96□□□□□ -0.49
HDAC6-233ENST00000489352 MTORP42345 2549 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 HIVEP3Q5T1R4 2406 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 PLRG1O43660 514 aaKnown RBP11.95□□□□□ -0.5
HDAC6-233ENST00000489352 FAM200BP0CF97 657 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 CD70P32970 193 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 NNMTP40261 264 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 PRPHP41219 470 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 ZNF720Q7Z2F6 126 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 TRAPPC11Q7Z392 1133 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 ACOT1Q86TX2 421 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 ZC3H3Q8IXZ2 948 aaKnown RBP11.95□□□□□ -0.5
HDAC6-233ENST00000489352 FUKQ8N0W3 1084 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 STK40Q8N2I9 435 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 ZNF276Q8N554 614 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 NECAB1Q8N987 351 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 ZMIZ2Q8NF64 920 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 SLC2A14Q8TDB8 520 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 GPBAR1Q8TDU6 330 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 KLK6Q92876 244 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 PLD4Q96BZ4 506 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 PPP1R13BQ96KQ4 1090 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 FAM129BQ96TA1 746 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 CMKLR1Q99788 373 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 MRPL44Q9H9J2 332 aaKnown RBP11.95□□□□□ -0.5
HDAC6-233ENST00000489352 CSNK1G1Q9HCP0 422 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 CLIC5Q9NZA1 410 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 FOXJ2Q9P0K8 574 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 GGT7Q9UJ14 662 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 PADI4Q9UM07 663 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 PHTF1Q9UMS5 762 aa11.95□□□□□ -0.5
HDAC6-233ENST00000489352 ZNF233A6NK53 670 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 TTC34A8MYJ7 566 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 NTN3O00634 580 aaPredicted RBP11.94□□□□□ -0.5
HDAC6-233ENST00000489352 TPP1O14773 563 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 KIF20AO95235 890 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 CST3P01034 146 aaPredicted RBP11.94□□□□□ -0.5
HDAC6-233ENST00000489352 SLFN14P0C7P3 912 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 CCDC130P13994 396 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 PRLRP16471 622 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 TNNI1P19237 187 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 MZF1P28698 734 aaPredicted RBP11.94□□□□□ -0.5
HDAC6-233ENST00000489352 ARID5BQ14865 1188 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 FAM46CQ5VWP2 391 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 NUGGCQ68CJ6 796 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 Q6ZSR6 202 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 TIPARPQ7Z3E1 657 aaKnown RBP11.94□□□□□ -0.5
HDAC6-233ENST00000489352 PTAR1Q7Z6K3 402 aaPredicted RBP11.94□□□□□ -0.5
HDAC6-233ENST00000489352 FAM217AQ8IXS0 508 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 GPD1LQ8N335 351 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 KDM1BQ8NB78 822 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 TMEM145Q8NBT3 493 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 RASSF8Q8NHQ8 419 aa11.94□□□□□ -0.5
HDAC6-233ENST00000489352 PRR7Q8TB68 274 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms