RNA–Protein interactions for RNA: ENST00000486828.6

PDLIM7-207, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-207ENST00000486828 VANGL2Q9ULK5 521 aa18.41■□□□□ 0.54
PDLIM7-207ENST00000486828 COL4A4P53420 1690 aaPredicted RBP18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 RPSAP08865 295 aaKnown RBP18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 TPBGLP0DKB5 382 aa18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 FGF3P11487 239 aaPredicted RBP18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 ELF1P32519 619 aa18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 CD68P34810 354 aaPredicted RBP18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 SERPINB6P35237 376 aa18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 RPL10AP62906 217 aaKnown RBP18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 ITPRIPL1Q6GPH6 555 aa18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 MRPL10Q7Z7H8 261 aaKnown RBP18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 TMEM135Q86UB9 458 aa18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 ISL2Q96A47 359 aa18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 ZNF669Q96BR6 464 aaPredicted RBP18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 VAT1Q99536 393 aa18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 RTP3Q9BQQ7 232 aa18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 PAAF1Q9BRP4 392 aa18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 RHOBTB2Q9BYZ6 727 aa18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 TKTL2Q9H0I9 626 aa18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 PPARGC1AQ9UBK2 798 aaKnown RBP18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 ADAM28Q9UKQ2 775 aa18.4■□□□□ 0.54
PDLIM7-207ENST00000486828 USP12O75317 370 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 USP1O94782 785 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 LMNAP02545 664 aaKnown RBP18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 PROCP04070 461 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 PRKCGP05129 697 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 ODC1P11926 461 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 ZBTB17Q13105 803 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 PCLAFQ15004 111 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 GNASQ5JWF2 1037 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 PM20D1Q6GTS8 502 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 RFWD3Q6PCD5 774 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 TRPV1Q8NER1 839 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 TTC8Q8TAM2 541 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 MLPHQ9BV36 600 aaPredicted RBP18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 MMADHCQ9H3L0 296 aaPredicted RBP18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.39■□□□□ 0.537e-8■■■■■ 55
PDLIM7-207ENST00000486828 OR12D3Q9UGF7 316 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 SNX10Q9Y5X0 201 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 TNPO2O14787 897 aaKnown RBP18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 GPR182O15218 404 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 ENTPD5O75356 428 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 TYK2P29597 1187 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 MAGEA12P43365 314 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 MGAT3Q09327 533 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 SMAD1Q15797 465 aaKnown RBP18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 TEDDM1Q5T9Z0 273 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 FAM171BQ6P995 826 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 CXCL17Q6UXB2 119 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 SCML4Q8N228 414 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 DNAAF3Q8N9W5 541 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 N4BP2L2Q92802 583 aaPredicted RBP18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 RBBP8Q99708 897 aa18.39■□□□□ 0.53
PDLIM7-207ENST00000486828 SCN10AQ9Y5Y9 1956 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 ZCWPW2A0A1B0GU75 182 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 LRIG2O94898 1065 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 NFKB1P19838 968 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 SPRP35270 261 aaPredicted RBP18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 SLC1A6P48664 564 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 TBCCQ15814 346 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 ANKRD20A4Q4UJ75 823 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 PPM1JQ5JR12 505 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 DCLRE1AQ6PJP8 1040 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 TAC4Q86UU9 113 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 SERINC5Q86VE9 423 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 TREML1Q86YW5 311 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 WDR75Q8IWA0 830 aaKnown RBP18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 TEX9Q8N6V9 391 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 PIWIL2Q8TC59 973 aaKnown RBP18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 MCUR1Q96AQ8 359 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 ANKRD27Q96NW4 1050 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 PGLYRP2Q96PD5 576 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 ACBD6Q9BR61 282 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 DCLRE1BQ9H816 532 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 SNX15Q9NRS6 342 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 THSD7BQ9C0I4 1608 aa18.38■□□□□ 0.53
PDLIM7-207ENST00000486828 MAGEB16A2A368 324 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 ITM2AO43736 263 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 CYP11A1P05108 521 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 SERPINE1P05121 402 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 KCNA4P22459 653 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 NPY2RP49146 381 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 LIMK2P53671 638 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 METTL23Q86XA0 190 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 DCLK2Q8N568 766 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 DPF3Q92784 378 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 TEKT5Q96M29 485 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 ZNF778Q96MU6 729 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 ZNF570Q96NI8 536 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 CCDC106Q9BWC9 280 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 STN1Q9H668 368 aaKnown RBP18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 AGO3Q9H9G7 860 aaKnown RBP18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 RNF186Q9NXI6 227 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 TMEM216Q9P0N5 145 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 DNAJC16Q9Y2G8 782 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 LYPLA1O75608 230 aaPredicted RBP18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 TRPA1O75762 1119 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 SERPINA6P08185 405 aa18.37■□□□□ 0.53
PDLIM7-207ENST00000486828 BDNFP23560 247 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms