RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ASLP04424 464 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 RETP07949 1114 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 GABRG2P18507 467 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 GALCP54803 685 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 OXCT1P55809 520 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 ST8SIA6P61647 398 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 ARHGAP8P85298 464 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 LMNB2Q03252 620 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 MAPK8IP2Q13387 824 aaPredicted RBP15.18■□□□□ 0.02
USP4-212ENST00000486549 ENPP2Q13822 863 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 SLC18A3Q16572 532 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 EFHC2Q5JST6 749 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 FAM72AQ5TYM5 149 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 RNF219Q5W0B1 726 aaPredicted RBP15.18■□□□□ 0.02
USP4-212ENST00000486549 FAM72DQ6L9T8 149 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 FAM72BQ86X60 149 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 CACUL1Q86Y37 369 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 PYROXD2Q8N2H3 581 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 GAB3Q8WWW8 586 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 TTC17Q96AE7 1141 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 ARHGEF26Q96DR7 871 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 CCDC42Q96M95 316 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 ANP32EQ9BTT0 268 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 NUP85Q9BW27 656 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 PACSIN1Q9BY11 444 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 ZYG11BQ9C0D3 744 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 MUC3BQ9H195 1237 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 SLC6A17Q9H1V8 727 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 NHEJ1Q9H9Q4 299 aaPredicted RBP15.18■□□□□ 0.02
USP4-212ENST00000486549 SPTLC3Q9NUV7 552 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 VPS28Q9UK41 221 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 NENFQ9UMX5 172 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 ERVW-1Q9UQF0 538 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 SPAG17Q6Q759 2223 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 EP300Q09472 2414 aaPredicted RBP15.17■□□□□ 0.02
USP4-212ENST00000486549 GVINP1Q7Z2Y8 2422 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 NYNRINQ9P2P1 1898 aaKnown RBP15.17■□□□□ 0.02
USP4-212ENST00000486549 IGLV3-10A0A075B6K4 115 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 DCLK1O15075 740 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 RNF8O76064 485 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 NDUFV2P19404 249 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 ECT2LQ008S8 904 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 SCAPQ12770 1279 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 SLC12A1Q13621 1099 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 ASTE1Q2TB18 679 aaPredicted RBP15.17■□□□□ 0.02
USP4-212ENST00000486549 USP39Q53GS9 565 aaKnown RBP15.17■□□□□ 0.02
USP4-212ENST00000486549 DAB2IPQ5VWQ8 1189 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 KIAA1324Q6UXG2 1013 aaKnown RBP15.17■□□□□ 0.02
USP4-212ENST00000486549 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.17■□□□□ 0.02
USP4-212ENST00000486549 TC2NQ8N9U0 490 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 FNIP1Q8TF40 1166 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 RLN3Q8WXF3 142 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 TBC1D31Q96DN5 1066 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 BTBD6Q96KE9 485 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 RPL10LQ96L21 214 aaKnown RBP15.17■□□□□ 0.02
USP4-212ENST00000486549 OSBPL2Q9H1P3 480 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 MTG2Q9H4K7 406 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 CD248Q9HCU0 757 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 GPATCH2LQ9NWQ4 482 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 PCSK1NQ9UHG2 260 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 ANAPC7Q9UJX3 599 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 FZD10Q9ULW2 581 aa15.17■□□□□ 0.02
USP4-212ENST00000486549 CREB3O43889 395 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 LRIG2O94898 1065 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 CYP1A2P05177 515 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 OR1E1P30953 314 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 STK19P49842 368 aaPredicted RBP15.16■□□□□ 0.02
USP4-212ENST00000486549 NRG1Q02297 640 aaPredicted RBP15.16■□□□□ 0.02
USP4-212ENST00000486549 PUM1Q14671 1186 aaKnown RBP eCLIP15.16■□□□□ 0.02
USP4-212ENST00000486549 ARTNQ5T4W7 220 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 C6orf118Q5T5N4 469 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 MANEALQ5VSG8 457 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 C11orf74Q86VG3 221 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 ARFGAP1Q8N6T3 406 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 CTNNBL1Q8WYA6 563 aaPredicted RBP15.16■□□□□ 0.02
USP4-212ENST00000486549 LOXL4Q96JB6 756 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 MRGPRX3Q96LB0 322 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 PEBP4Q96S96 227 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 FEM1AQ9BSK4 669 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 TMEM245Q9H330 911 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 CTTNBP2NLQ9P2B4 639 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 PPARGC1AQ9UBK2 798 aaKnown RBP15.16■□□□□ 0.02
USP4-212ENST00000486549 SLC25A13Q9UJS0 675 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 TBC1D30Q9Y2I9 924 aa15.16■□□□□ 0.02
USP4-212ENST00000486549 OTOGLQ3ZCN5 2332 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 TTC34A8MYJ7 566 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 PRPSAP2O60256 369 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 SRPRAP08240 638 aaKnown RBP15.15■□□□□ 0.02
USP4-212ENST00000486549 H2AFZP0C0S5 128 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 MIPP30301 263 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 PLK1P53350 603 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 AIF1P55008 147 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 SULT2A1Q06520 285 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 H2AFVQ71UI9 128 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 SETD3Q86TU7 594 aaPredicted RBP15.15■□□□□ 0.02
USP4-212ENST00000486549 KBTBD6Q86V97 674 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 FAM160A2Q8N612 972 aaPredicted RBP15.15■□□□□ 0.02
USP4-212ENST00000486549 FRMD1Q8N878 549 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 OR7D4Q8NG98 312 aa15.15■□□□□ 0.02
USP4-212ENST00000486549 ZNF564Q8TBZ8 553 aaPredicted RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms