RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 WFIKKN2Q8TEU8 576 aa17.58■□□□□ 0.4
VIM-205ENST00000485947 TMA16Q96EY4 203 aaKnown RBP17.58■□□□□ 0.4
VIM-205ENST00000485947 HES6Q96HZ4 224 aa17.58■□□□□ 0.4
VIM-205ENST00000485947 BTBD6Q96KE9 485 aa17.58■□□□□ 0.4
VIM-205ENST00000485947 NCAPGQ9BPX3 1015 aa17.58■□□□□ 0.4
VIM-205ENST00000485947 TLR10Q9BXR5 811 aa17.58■□□□□ 0.4
VIM-205ENST00000485947 ARRDC1-AS1Q9H2J1 176 aa17.58■□□□□ 0.4
VIM-205ENST00000485947 PLK2Q9NYY3 685 aa17.58■□□□□ 0.4
VIM-205ENST00000485947 THAP10Q9P2Z0 257 aaPredicted RBP17.58■□□□□ 0.4
VIM-205ENST00000485947 HCN2Q9UL51 889 aa17.58■□□□□ 0.4
VIM-205ENST00000485947 TLR6Q9Y2C9 796 aa17.58■□□□□ 0.4
VIM-205ENST00000485947 HYOU1Q9Y4L1 999 aa17.58■□□□□ 0.4
VIM-205ENST00000485947 ATRXP46100 2492 aa17.58■□□□□ 0.4
VIM-205ENST00000485947 A0A1W2PQF6 199 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 TCRBV21S2A2A0A5A6 115 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 BCLAF3A2AJT9 711 aaKnown RBP17.57■□□□□ 0.4
VIM-205ENST00000485947 C2CD4BA6NLJ0 364 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 TMEM110-MUSTN1A8MSY1 372 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 ENC1O14682 589 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 TRIM24O15164 1050 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 SPOPO43791 374 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 DAB1O75553 588 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 GJB6O95452 261 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 COMTP21964 271 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 KCNA4P22459 653 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 CTNNA2P26232 953 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 MPLP40238 635 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 ZNF143P52747 638 aaPredicted RBP17.57■□□□□ 0.4
VIM-205ENST00000485947 TBX4P57082 545 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 YWHAZP63104 245 aaKnown RBP17.57■□□□□ 0.4
VIM-205ENST00000485947 STARD3Q14849 445 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 RPS6KA1Q15418 735 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 EGFLAMQ63HQ2 1017 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 RNF43Q68DV7 783 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 SLC36A4Q6YBV0 504 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 METTL3Q86U44 580 aaKnown RBP17.57■□□□□ 0.4
VIM-205ENST00000485947 C12orf50Q8NA57 414 aaPredicted RBP17.57■□□□□ 0.4
VIM-205ENST00000485947 HMGB4Q8WW32 186 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 TPSD1Q9BZJ3 242 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 TRIM7Q9C029 511 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 GOLPH3Q9H4A6 298 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 POPDC2Q9HBU9 364 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 CD248Q9HCU0 757 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 ELOVL2Q9NXB9 296 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 SNX12Q9UMY4 172 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 SAR1BQ9Y6B6 198 aa17.57■□□□□ 0.4
VIM-205ENST00000485947 CCDC66A2RUB6 948 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 CES2O00748 559 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 CAPN9O14815 690 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 SLC30A4O14863 429 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 ACSL4O60488 711 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 URI1O94763 535 aaPredicted RBP17.56■□□□□ 0.4
VIM-205ENST00000485947 FYNP06241 537 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 PSMA2P25787 234 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 HOXD9P28356 352 aaPredicted RBP17.56■□□□□ 0.4
VIM-205ENST00000485947 HOXD12P35452 270 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 PTPN9P43378 593 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 OGDHQ02218 1023 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 ZNF252P-AS1Q0IIN9 211 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 MAP7D1Q3KQU3 841 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 LPCAT2Q7L5N7 544 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 PGBD3Q8N328 593 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 UBL4BQ8N7F7 174 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.56■□□□□ 0.4
VIM-205ENST00000485947 CLEC4CQ8WTT0 213 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 RXFP2Q8WXD0 754 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 BHMTQ93088 406 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 FAM149B1Q96BN6 582 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 SLC39A13Q96H72 371 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 CNPY3Q9BT09 278 aa17.56■□□□□ 0.4
VIM-205ENST00000485947 TYW5A2RUC4 315 aaKnown RBP17.55■□□□□ 0.4
VIM-205ENST00000485947 ANTXRLA6NF34 631 aa17.55■□□□□ 0.4
VIM-205ENST00000485947 MAP3K13O43283 966 aa17.55■□□□□ 0.4
VIM-205ENST00000485947 MSI1O43347 362 aaKnown RBP17.55■□□□□ 0.4
VIM-205ENST00000485947 PSTPIP1O43586 416 aa17.55■□□□□ 0.4
VIM-205ENST00000485947 RNF8O76064 485 aa17.55■□□□□ 0.4
VIM-205ENST00000485947 SLC2A3P11169 496 aa17.55■□□□□ 0.4
VIM-205ENST00000485947 PDGFRAP16234 1089 aa17.55■□□□□ 0.4
VIM-205ENST00000485947 GABRG2P18507 467 aa17.55■□□□□ 0.4
VIM-205ENST00000485947 SDC4P31431 198 aa17.55■□□□□ 0.4
VIM-205ENST00000485947 CTNNA1P35221 906 aaKnown RBP17.55■□□□□ 0.4
VIM-205ENST00000485947 FLT3P36888 993 aa17.55■□□□□ 0.4
VIM-205ENST00000485947 PIK3R6Q5UE93 754 aa17.55■□□□□ 0.4
VIM-205ENST00000485947 KIAA0907Q7Z7F0 614 aaPredicted RBP17.55■□□□□ 0.4
VIM-205ENST00000485947 EMC1Q8N766 993 aa17.55■□□□□ 0.4
VIM-205ENST00000485947 DQX1Q8TE96 717 aaKnown RBP17.55■□□□□ 0.4
VIM-205ENST00000485947 SLC2A13Q96QE2 648 aa17.55■□□□□ 0.4
VIM-205ENST00000485947 RRN3Q9NYV6 651 aa17.55■□□□□ 0.4
VIM-205ENST00000485947 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.55■□□□□ 0.4
VIM-205ENST00000485947 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.55■□□□□ 0.4
VIM-205ENST00000485947 STON1Q9Y6Q2 735 aa17.55■□□□□ 0.4
VIM-205ENST00000485947 MYO18AQ92614 2054 aaKnown RBP17.55■□□□□ 0.4
VIM-205ENST00000485947 DCLK1O15075 740 aa17.54■□□□□ 0.4
VIM-205ENST00000485947 C7P10643 843 aa17.54■□□□□ 0.4
VIM-205ENST00000485947 NOS2P35228 1153 aa17.54■□□□□ 0.4
VIM-205ENST00000485947 MATKP42679 507 aa17.54■□□□□ 0.4
VIM-205ENST00000485947 ATXN1P54253 815 aaKnown RBP17.54■□□□□ 0.4
VIM-205ENST00000485947 RNASE9P60153 205 aaKnown RBP17.54■□□□□ 0.4
VIM-205ENST00000485947 GEN1Q17RS7 908 aa17.54■□□□□ 0.4
VIM-205ENST00000485947 LRRC38Q5VT99 294 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms