RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 ERVW-1Q9UQF0 538 aa16.04■□□□□ 0.16
HMGA1-206ENST00000478214 TBC1D30Q9Y2I9 924 aa16.04■□□□□ 0.16
HMGA1-206ENST00000478214 OR51B4Q9Y5P0 310 aa16.04■□□□□ 0.16
HMGA1-206ENST00000478214 IGHV1OR15-9A0A0B4J2B8 117 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 TTC34A8MYJ7 566 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 MAP3K13O43283 966 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 EPN2O95208 641 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 STK19P49842 368 aaPredicted RBP16.03■□□□□ 0.16
HMGA1-206ENST00000478214 SPEM2Q0P670 501 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 RNF219Q5W0B1 726 aaPredicted RBP16.03■□□□□ 0.16
HMGA1-206ENST00000478214 PMS2CLQ68D20 193 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 SCYL2Q6P3W7 929 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 CACUL1Q86Y37 369 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 OR2T3Q8NH03 318 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 NTAN1Q96AB6 310 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 SIPA1Q96FS4 1042 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 RPL10LQ96L21 214 aaKnown RBP16.03■□□□□ 0.16
HMGA1-206ENST00000478214 TRIM7Q9C029 511 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 OSBPL2Q9H1P3 480 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 PRSS16Q9NQE7 514 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 ARHGAP20Q9P2F6 1191 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 OR12D3Q9UGF7 316 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 SUN2Q9UH99 717 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 ABCA7Q8IZY2 2146 aa16.03■□□□□ 0.16
HMGA1-206ENST00000478214 A0A087X0T9 212 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 TMEM191CA6NGB0 347 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 FAM72CH0Y354 149 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 AP5Z1O43299 807 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 ZNF217O75362 1048 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 RHOCP08134 193 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 SRPRAP08240 638 aaKnown RBP16.02■□□□□ 0.16
HMGA1-206ENST00000478214 FAM228BP0C875 321 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 PSMA2P25787 234 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 HNRNPH3P31942 346 aaKnown RBP16.02■□□□□ 0.16
HMGA1-206ENST00000478214 CCDC6Q16204 474 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 HNRNPA1L2Q32P51 320 aaKnown RBP16.02■□□□□ 0.16
HMGA1-206ENST00000478214 FAM72AQ5TYM5 149 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 MANEALQ5VSG8 457 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 FAM72DQ6L9T8 149 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 TMC6Q7Z403 805 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 METTL3Q86U44 580 aaKnown RBP16.02■□□□□ 0.16
HMGA1-206ENST00000478214 VPS36Q86VN1 386 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 FAM72BQ86X60 149 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 TMEFF1Q8IYR6 380 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 KDM1BQ8NB78 822 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 PRCCQ92733 491 aaPredicted RBP16.02■□□□□ 0.16
HMGA1-206ENST00000478214 ZYG11BQ9C0D3 744 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 MUC3BQ9H195 1237 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 MYO1AQ9UBC5 1043 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 ZNF212Q9UDV6 495 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 VPS28Q9UK41 221 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 USP18Q9UMW8 372 aa16.02■□□□□ 0.16
HMGA1-206ENST00000478214 MUC22E2RYF6 1773 aaPredicted RBP16.02■□□□□ 0.15
HMGA1-206ENST00000478214 SPAG17Q6Q759 2223 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 SIN3BO75182 1162 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 MYBL1P10243 752 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 OR1E1P30953 314 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 DHPSP49366 369 aaPredicted RBP16.01■□□□□ 0.15
HMGA1-206ENST00000478214 NRG1Q02297 640 aaPredicted RBP16.01■□□□□ 0.15
HMGA1-206ENST00000478214 SULT2A1Q06520 285 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 ZNF252P-AS1Q0IIN9 211 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 SCAPQ12770 1279 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 TRIM14Q14142 442 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 ARMCX6Q7L4S7 300 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 LPCAT2Q7L5N7 544 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 SLFN11Q7Z7L1 901 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 SETD3Q86TU7 594 aaPredicted RBP16.01■□□□□ 0.15
HMGA1-206ENST00000478214 PYROXD2Q8N2H3 581 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 DEFB119Q8N690 84 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 OR8K1Q8NGG5 319 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 TRIM11Q96F44 468 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 PPP1R9BQ96SB3 815 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 PSMB7Q99436 277 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 ITM2CQ9NQX7 267 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 SEMA4GQ9NTN9 838 aa16.01■□□□□ 0.15
HMGA1-206ENST00000478214 USP36Q9P275 1121 aaKnown RBP16.01■□□□□ 0.15
HMGA1-206ENST00000478214 PPARGC1AQ9UBK2 798 aaKnown RBP16.01■□□□□ 0.15
HMGA1-206ENST00000478214 A0A0D9SEW6 157 aa16■□□□□ 0.15
HMGA1-206ENST00000478214 BCLAF3A2AJT9 711 aaKnown RBP16■□□□□ 0.15
HMGA1-206ENST00000478214 SNAP91O60641 907 aa16■□□□□ 0.15
HMGA1-206ENST00000478214 LRP3O75074 770 aa16■□□□□ 0.15
HMGA1-206ENST00000478214 LRIG2O94898 1065 aa16■□□□□ 0.15
HMGA1-206ENST00000478214 ACADMP11310 421 aa16■□□□□ 0.15
HMGA1-206ENST00000478214 EIF4A3P38919 411 aaKnown RBP16■□□□□ 0.15
HMGA1-206ENST00000478214 PTGER3P43115 390 aa16■□□□□ 0.15
HMGA1-206ENST00000478214 TPMTP51580 245 aa16■□□□□ 0.15
HMGA1-206ENST00000478214 RPS14P62263 151 aaKnown RBP16■□□□□ 0.15
HMGA1-206ENST00000478214 RPL6Q02878 288 aaKnown RBP16■□□□□ 0.15
HMGA1-206ENST00000478214 CREB5Q02930 508 aa16■□□□□ 0.15
HMGA1-206ENST00000478214 ARID5BQ14865 1188 aa16■□□□□ 0.15
HMGA1-206ENST00000478214 EFHC2Q5JST6 749 aa16■□□□□ 0.15
HMGA1-206ENST00000478214 C6orf118Q5T5N4 469 aa16■□□□□ 0.15
HMGA1-206ENST00000478214 C9orf64Q5T6V5 341 aa16■□□□□ 0.15
HMGA1-206ENST00000478214 RWDD4Q6NW29 188 aaKnown RBP16■□□□□ 0.15
HMGA1-206ENST00000478214 SARM1Q6SZW1 724 aa16■□□□□ 0.15
HMGA1-206ENST00000478214 SLC36A4Q6YBV0 504 aa16■□□□□ 0.15
HMGA1-206ENST00000478214 DRC7Q8IY82 874 aa16■□□□□ 0.15
HMGA1-206ENST00000478214 ARFGAP1Q8N6T3 406 aa16■□□□□ 0.15
HMGA1-206ENST00000478214 GPR161Q8N6U8 529 aaKnown RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms