RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 FAM110CQ1W6H9 321 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 FKBP1CQ5VVH2 108 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 DENND2CQ68D51 928 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 KSR2Q6VAB6 950 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 CHSY1Q86X52 802 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 CERS5Q8N5B7 392 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 CCDC33Q8N5R6 958 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 METTL25Q8N6Q8 603 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 RNF152Q8N8N0 203 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 C11orf44Q8N8P7 122 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 PNLDC1Q8NA58 520 aaKnown RBP5.34□□□□□ -1.55
VPS50-214ENST00000477935 HERVK_113Q902F9 699 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 RITA1Q96K30 269 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 TBCBQ99426 244 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 SELENOOQ9BVL4 669 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 TMEM39BQ9GZU3 492 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 ZCWPW1Q9H0M4 648 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 HEYLQ9NQ87 328 aaPredicted RBP5.34□□□□□ -1.55
VPS50-214ENST00000477935 GJD2Q9UKL4 321 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 COG5Q9UP83 839 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 PSME4Q14997 1843 aa5.34□□□□□ -1.55
VPS50-214ENST00000477935 XIRP2A4UGR9 3374 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 ALPK3Q96L96 1907 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 CLCA1A8K7I4 914 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 TCP10L2B9ZVM9 353 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 PRRT4C9JH25 899 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 POC1B-GALNT4F8VUJ3 575 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 TMPRSS11DO60235 418 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 ALADP13716 330 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 CD19P15391 556 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 FGFR2P21802 821 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 RBL1P28749 1068 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 SERPINA13PQ6UXR4 307 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 ZNF66Q6ZN08 573 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 C15orf52Q6ZUT6 534 aaKnown RBP5.33□□□□□ -1.56
VPS50-214ENST00000477935 BCDIN3DQ7Z5W3 292 aaKnown RBP5.33□□□□□ -1.56
VPS50-214ENST00000477935 GALNT4Q8N4A0 578 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 BADQ92934 168 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 LRRC46Q96FV0 321 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 ZDHHC12Q96GR4 267 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 ZC3H10Q96K80 434 aaKnown RBP5.33□□□□□ -1.56
VPS50-214ENST00000477935 FAM227BQ96M60 508 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 CFAP53Q96M91 514 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 COLEC11Q9BWP8 271 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 SLC25A32Q9H2D1 315 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 TDRD3Q9H7E2 651 aaKnown RBP5.33□□□□□ -1.56
VPS50-214ENST00000477935 SNX15Q9NRS6 342 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 ASIC5Q9NY37 505 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 MGAT4CQ9UBM8 478 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 ZNF112Q9UJU3 913 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 SLC27A6Q9Y2P4 619 aa5.33□□□□□ -1.56
VPS50-214ENST00000477935 PTPRZ1P23471 2315 aaPredicted RBP5.32□□□□□ -1.56
VPS50-214ENST00000477935 A0A1W2PPC4 97 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 TCRBV5S1A1TA0A578 114 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 A8MVJ9 347 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 DNM1LO00429 736 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 APOL1O14791 398 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 AREL1O15033 823 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 SNX2O60749 519 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 CAND2O75155 1236 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 PCCAP05165 728 aaPredicted RBP5.32□□□□□ -1.56
VPS50-214ENST00000477935 CELA2AP08217 269 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 MYL3P08590 195 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 MCM5P33992 734 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 IGHMBP2P38935 993 aaKnown RBP5.32□□□□□ -1.56
VPS50-214ENST00000477935 KCNJ4P48050 445 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 COPAP53621 1224 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 TBX4P57082 545 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 ST3GAL2Q16842 350 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 KIAA1614Q5VZ46 1190 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 CCDC174Q6PII3 467 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 CLEC9AQ6UXN8 241 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 CATSPERGQ6ZRH7 1159 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 CCDC191Q8NCU4 936 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 STARD7Q9NQZ5 370 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 GJB4Q9NTQ9 266 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 TMOD2Q9NZR1 351 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 MYO1AQ9UBC5 1043 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 STEAP1Q9UHE8 339 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 PCDHAC2Q9Y5I4 1007 aa5.32□□□□□ -1.56
VPS50-214ENST00000477935 CACNA1BQ00975 2339 aa5.31□□□□□ -1.56
VPS50-214ENST00000477935 RPAP1Q9BWH6 1393 aaPredicted RBP5.31□□□□□ -1.56
VPS50-214ENST00000477935 DNAH12Q6ZR08 3092 aa5.31□□□□□ -1.56
VPS50-214ENST00000477935 ANO9A1A5B4 782 aa5.31□□□□□ -1.56
VPS50-214ENST00000477935 PRC1O43663 620 aa5.31□□□□□ -1.56
VPS50-214ENST00000477935 KRT18P05783 430 aaKnown RBP5.31□□□□□ -1.56
VPS50-214ENST00000477935 CHRM5P08912 532 aaPredicted RBP5.31□□□□□ -1.56
VPS50-214ENST00000477935 ITGB8P26012 769 aa5.31□□□□□ -1.56
VPS50-214ENST00000477935 CERS1P27544 350 aa5.31□□□□□ -1.56
VPS50-214ENST00000477935 EPHB2P29323 1055 aa5.31□□□□□ -1.56
VPS50-214ENST00000477935 ATICP31939 592 aa5.31□□□□□ -1.56
VPS50-214ENST00000477935 HTR7P34969 479 aa5.31□□□□□ -1.56
VPS50-214ENST00000477935 COPB1P53618 953 aaKnown RBP5.31□□□□□ -1.56
VPS50-214ENST00000477935 DEUP1Q05D60 604 aa5.31□□□□□ -1.56
VPS50-214ENST00000477935 CLCA4Q14CN2 919 aa5.31□□□□□ -1.56
VPS50-214ENST00000477935 FAM187BQ17R55 369 aa5.31□□□□□ -1.56
VPS50-214ENST00000477935 CERKLQ49MI3 558 aaPredicted RBP5.31□□□□□ -1.56
VPS50-214ENST00000477935 ZKSCAN2Q63HK3 967 aa5.31□□□□□ -1.56
VPS50-214ENST00000477935 CRTC1Q6UUV9 634 aa5.31□□□□□ -1.56
VPS50-214ENST00000477935 SLC39A5Q6ZMH5 540 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms