RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 CCAR2Q8N163 923 aaKnown RBP12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ATP6V0D2Q8N8Y2 350 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 OR2T34Q8NGX1 318 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 RHBDD1Q8TEB9 315 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SETD7Q8WTS6 366 aaKnown RBP12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 NCKAP1Q9Y2A7 1128 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 OR51B4Q9Y5P0 310 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 A0A1W2PP55 124 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 A0A1W2PR77 199 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 H0Y8X5 98 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 KCNK3O14649 394 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 LATO43561 262 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 DFNA5O60443 496 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 RNASEH1O60930 286 aaKnown RBP12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 APOEP02649 317 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SLC2A3P11169 496 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 GOT1P17174 413 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 MZF1P28698 734 aaPredicted RBP12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 DRD3P35462 400 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 STK19P49842 368 aaPredicted RBP12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SULT2A1Q06520 285 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SCAPQ12770 1279 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SFSWAPQ12872 951 aaKnown RBP12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SUZ12Q15022 739 aaKnown RBP12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SHBQ15464 509 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 EXOC3L4Q17RC7 722 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 EFHC1Q5JVL4 640 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 OLFML1Q6UWY5 402 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 LAYNQ6UX15 382 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 GBP6Q6ZN66 633 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CHSY1Q86X52 802 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 STK40Q8N2I9 435 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ZNF397Q8NF99 534 aaPredicted RBP12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 OR52K2Q8NGK3 314 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SNX19Q92543 992 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 NT5C3BQ969T7 300 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PPP1R13BQ96KQ4 1090 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 RPL10LQ96L21 214 aaKnown RBP12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ARHGAP20Q9P2F6 1191 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 DKK4Q9UBT3 224 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 AJAP1Q9UKB5 411 aaPredicted RBP12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ASXL3Q9C0F0 2248 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 LOC400499M0QZD8 3231 aa12.64□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 A0A1B0GTQ1 180 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 A0A1B0GVM2 712 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 TCAF2A6NFQ2 919 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 F5H5T6 163 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 I6L893 689 aaPredicted RBP12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 FOXN3O00409 490 aaPredicted RBP12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 WNT9AO14904 365 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ATP9BO43861 1147 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 HSF2BPO75031 334 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 MOCS3O95396 460 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ADH1BP00325 375 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 C5AR1P21730 350 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CCR1P32246 355 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 IRAK1P51617 712 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CDK17Q00537 523 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CAMK2BQ13554 666 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 AUHQ13825 339 aaKnown RBP12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ELAVL3Q14576 367 aaKnown RBP12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ARHGAP44Q17R89 818 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 TTC39BQ5VTQ0 682 aaPredicted RBP12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 OTUD1Q5VV17 481 aaPredicted RBP12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SND1Q7KZF4 910 aaKnown RBP eCLIP12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SLC26A9Q7LBE3 791 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 FAM71AQ8IYT1 594 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 FEM1AQ9BSK4 669 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SLC12A6Q9UHW9 1150 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SARDHQ9UL12 918 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 TPX2Q9ULW0 747 aaKnown RBP12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 TBC1D30Q9Y2I9 924 aa12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 FASNP49327 2511 aaKnown RBP12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SMG1Q96Q15 3661 aaKnown RBP12.63□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CHD5Q8TDI0 1954 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 LRRC72A6NJI9 287 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 TNFSF14O43557 240 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ERBB2P04626 1255 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 VAV1P15498 845 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PDGFRAP16234 1089 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CDH5P33151 784 aaPredicted RBP12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 NOS2P35228 1153 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 GRK6P43250 576 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 GABRB2P47870 512 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 METAP1P53582 386 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ADPRHP54922 357 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 OXCT1P55809 520 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 UBE2HP62256 183 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SLC6A3Q01959 620 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 MTA1Q13330 715 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SMAD1Q15797 465 aaKnown RBP12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CAMK4Q16566 473 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PTPN20Q4JDL3 420 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 LRSAM1Q6UWE0 723 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 C11orf57Q6ZUT1 292 aaPredicted RBP12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 FAM183BPQ6ZVS7 135 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 C14orf80Q86SX3 495 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SLC47A2Q86VL8 602 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CIR1Q86X95 450 aaPredicted RBP12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CCDC117Q8IWD4 279 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms