RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	FAM76B	Q5HYJ3	339 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	COL13A1	Q5TAT6	717 aa	Predicted RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	DARS2	Q6PI48	645 aa	Known RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	CRELD2	Q6UXH1	353 aa	Predicted RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	USP49	Q70CQ1	688 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	FAM217A	Q8IXS0	508 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	DIS3L2	Q8IYB7	885 aa	Known RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	THNSL1	Q8IYQ7	743 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	FUK	Q8N0W3	1084 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	CLEC4F	Q8N1N0	589 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	KRT78	Q8N1N4	520 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	CCDC12	Q8WUD4	166 aa	Predicted RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	HTR3C	Q8WXA8	447 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	ROBO4	Q8WZ75	1007 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	C18orf8	Q96DM3	657 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	HSPBAP1	Q96EW2	488 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	FAM71F1	Q96KD3	344 aa	Predicted RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	FGD4	Q96M96	766 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	SYT15	Q9BQS2	421 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	ADGRE3	Q9BY15	652 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	HOXD1	Q9GZZ0	328 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	KCNF1	Q9H3M0	494 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	RNF41	Q9H4P4	317 aa	Predicted RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	OPA3	Q9H6K4	179 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	DHX33	Q9H6R0	707 aa	Known RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	BRD7	Q9NPI1	651 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	PI4KB	Q9UBF8	816 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	PYCARD	Q9ULZ3	195 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	SAMHD1	Q9Y3Z3	626 aa	Known RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	PCDHB9	Q9Y5E1	797 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	NRCAM	Q92823	1304 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	BCLAF3	A2AJT9	711 aa	Known RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	OR5K3	A6NET4	321 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	CENPBD1	B2RD01	187 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	NKRF	O15226	690 aa	Known RBP eCLIP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	OGT	O15294	1046 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	DAPK3	O43293	454 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	MED7	O43513	233 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	AFP	P02771	609 aa	Known RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	NCF1	P14598	390 aa	Predicted RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	GNS	P15586	552 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	AKT1	P31749	480 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	IGHMBP2	P38935	993 aa	Known RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	CDKN1B	P46527	198 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	GSS	P48637	474 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	MNX1	P50219	401 aa	Predicted RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	P2RY4	P51582	365 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	CCR9	P51686	369 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	SEC24C	P53992	1094 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	EMP3	P54852	163 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	STX17	P56962	302 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	MAP3K10	Q02779	954 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	YWHAH	Q04917	246 aa	Predicted RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	SMAD2	Q15796	467 aa	Known RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	KRT24	Q2M2I5	525 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	ZSCAN23	Q3MJ62	389 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	PITRM1	Q5JRX3	1037 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	CCDC102B	Q68D86	513 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	OR52E8	Q6IFG1	317 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	OTOA	Q7RTW8	1153 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	ADAMTSL2	Q86TH1	951 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	MIB1	Q86YT6	1006 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	RFX6	Q8HWS3	928 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	MCOLN2	Q8IZK6	566 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	ZCCHC7	Q8N3Z6	543 aa	Known RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	DPP10	Q8N608	796 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	DDHD1	Q8NEL9	900 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	OR6B3	Q8NGW1	331 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	LHFPL5	Q8TAF8	219 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	GTF3A	Q92664	365 aa	Known RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	TNFRSF14	Q92956	283 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	KISS1R	Q969F8	398 aa	Predicted RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	IQCD	Q96DY2	449 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	ZFYVE19	Q96K21	471 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	P2RX7	Q99572	595 aa	Known RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	C1QTNF3	Q9BXJ4	246 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	KLC2	Q9H0B6	622 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	POFUT1	Q9H488	388 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	COPS7B	Q9H9Q2	264 aa	Predicted RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	KCNK12	Q9HB15	430 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	FBRSL1	Q9HCM7	1045 aa	Known RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	SAMSN1	Q9NSI8	373 aa	Known RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	ACTR10	Q9NZ32	417 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	NARF	Q9UHQ1	456 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	BAIAP2L1	Q9UHR4	511 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	DNMT3L	Q9UJW3	386 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	ANAPC2	Q9UJX6	822 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	CLCA2	Q9UQC9	943 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	PCDHA10	Q9Y5I2	948 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	COL17A1	Q9UMD9	1497 aa	Predicted RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	ADAM20	O43506	726 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	ATG13	O75143	517 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	CABYR	O75952	493 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	CLPX	O76031	633 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	DIRAS3	O95661	229 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	JUP	P14923	745 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	TYMP	P19971	482 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	PON1	P27169	355 aa		3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	EEF1D	P29692	281 aa	Known RBP	3.57	□□□□□ -1.84
UBR3-208	ENST00000474426	RRM2	P31350	389 aa		3.57	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms