RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ZNF423Q2M1K9 1284 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 KIF19Q2TAC6 998 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 RABGAP1LQ5R372 815 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 RAB44Q7Z6P3 723 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 AADATQ8N5Z0 425 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 KDF1Q8NAX2 398 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 ZNF397Q8NF99 534 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 OR52K2Q8NGK3 314 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 BAHD1Q8TBE0 780 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 PTPRN2Q92932 1015 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 TM7SF3Q9NS93 570 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 ADAMTS1Q9UHI8 967 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 SLC12A6Q9UHW9 1150 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 SNX11Q9Y5W9 270 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 FHOD1Q9Y613 1164 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 HS3ST4Q9Y661 456 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 PLXNB3Q9ULL4 1909 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 A0A1W2PP55 124 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 I6L893 689 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 RNASEH1O60930 286 aaKnown RBP19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 TRIM16O95361 564 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 FTH1P19P0C7X4 201 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 TFE3P19532 575 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 CDH5P33151 784 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 GALCP54803 685 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 KCNMA1Q12791 1236 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 NME3Q13232 169 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 AUHQ13825 339 aaKnown RBP19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 KCNT1Q5JUK3 1230 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 RNF219Q5W0B1 726 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 KIAA0895LQ68EN5 471 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 CHCHD4Q8N4Q1 142 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 GANCQ8TET4 914 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 RNF34Q969K3 372 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 ALG14Q96F25 216 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 RPRD1AQ96P16 312 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 NAA15Q9BXJ9 866 aaKnown RBP19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 NUP62CLQ9H1M0 184 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 SYNCQ9H7C4 482 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 ANLNQ9NQW6 1124 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 PIGVQ9NUD9 493 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 VANGL2Q9ULK5 521 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 FZD4Q9ULV1 537 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 NCKAP1Q9Y2A7 1128 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 ANKRD6Q9Y2G4 727 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 MSRB2Q9Y3D2 182 aa19.37■□□□□ 0.69
CCDC88B-206ENST00000473405 FAM221BA6H8Z2 402 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 RNASEH2AO75792 299 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 SLC8A1P32418 973 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 NOS2P35228 1153 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 PSMD8P48556 350 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 RAPGEF1Q13905 1077 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 KCNJ12Q14500 433 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 ELAVL3Q14576 367 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 DRAP1Q14919 205 aaPredicted RBP19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 KLHDC7AQ5VTJ3 777 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 NCEH1Q6PIU2 408 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 DBX2Q6ZNG2 339 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 C14orf80Q86SX3 495 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 GLRX5Q86SX6 157 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 STK40Q8N2I9 435 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 FRS2Q8WU20 508 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 NPY6RQ99463 290 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 NEUROG2Q9H2A3 272 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 EBF2Q9HAK2 575 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 SAMSN1Q9NSI8 373 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 ZMIZ1Q9ULJ6 1067 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 PCDHGB2Q9Y5G2 931 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 OR51B4Q9Y5P0 310 aa19.36■□□□□ 0.69
CCDC88B-206ENST00000473405 LOC400499M0QZD8 3231 aa19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 FAM47DPA6NHR8 397 aa19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 M0QYT0 321 aa19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 PAGE1O75459 146 aa19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 CYP11B1P15538 503 aa19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 METAP1P53582 386 aa19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 SNX16P57768 344 aa19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 BPIFB4P59827 614 aa19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 TEAD4Q15561 434 aa19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 C5orf22Q49AR2 442 aa19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 ZDHHC17Q8IUH5 632 aa19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 SETD7Q8WTS6 366 aaKnown RBP19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 NT5C3BQ969T7 300 aa19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 DACH1Q9UI36 760 aa19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 BTBD3Q9Y2F9 522 aa19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 PCDHB9Q9Y5E1 797 aa19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 DOCK9Q9BZ29 2069 aa19.35■□□□□ 0.69
CCDC88B-206ENST00000473405 A0A1W2PPC4 97 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 FAM170AA1A519 330 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 TMEM8BA6NDV4 472 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 FLRT2O43155 660 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 ADCY5O95622 1261 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 ADH1BP00325 375 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 DRD3P35462 400 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 CTSKP43235 329 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 GABRB2P47870 512 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 CXCR3P49682 368 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 VASPP50552 380 aaPredicted RBP19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 ADPRHP54922 357 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 SULT2A1Q06520 285 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 MTA1Q13330 715 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms