RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MARK1Q9P0L2 795 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 NUDT5Q9UKK9 219 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 HCN2Q9UL51 889 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 ZNF510Q9Y2H8 683 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 STARD13Q9Y3M8 1113 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 AK5Q9Y6K8 562 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 UNC79Q9P2D8 2635 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 TP53BP1Q12888 1972 aaPredicted RBP12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 COL5A1P20908 1838 aaPredicted RBP12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 MEI4A8MW99 385 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 MDM4O15151 490 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 BCAT2O15382 392 aaPredicted RBP12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 STC2O76061 302 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 SERPING1P05155 500 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 JUPP14923 745 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 TNFAIP3P21580 790 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 CD6P30203 668 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 CHKAP35790 457 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 GABRB2P47870 512 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 CXADRP78310 365 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 CENPCQ03188 943 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 ARID5BQ14865 1188 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 RTP5Q14D33 572 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 CLEC16AQ2KHT3 1053 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 CCDC157Q569K6 752 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 EFHC1Q5JVL4 640 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 OR6B2Q6IFH4 312 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 MSANTD2Q6P1R3 559 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 Q6ZNB5 142 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 FAM183BPQ6ZVS7 135 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 RSRC2Q7L4I2 434 aaKnown RBP12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 BEND5Q7L4P6 421 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 TMC6Q7Z403 805 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 ZDHHC17Q8IUH5 632 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 ZCCHC9Q8N567 271 aaKnown RBP12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 CADM4Q8NFZ8 388 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 SNIP1Q8TAD8 396 aaKnown RBP12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 CPA5Q8WXQ8 436 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 EDEM1Q92611 657 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 FAM149B1Q96BN6 582 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 C18orf8Q96DM3 657 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 PIWIL1Q96J94 861 aaKnown RBP12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 BBS2Q9BXC9 721 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 MIR1-1HGQ9H1L0 117 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 WSB2Q9NYS7 404 aaPredicted RBP12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 RASAL2Q9UJF2 1139 aa12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 BZW2Q9Y6E2 419 aaKnown RBP12.35□□□□□ -0.43
SQSTM1-206ENST00000466342 FAM170AA1A519 330 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 CACNG3O60359 315 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 MFAP3LO75121 409 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 GLI1P08151 1106 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 SKILP12757 684 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 NCAM1P13591 858 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 TYRP14679 529 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 MMP8P22894 467 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 HNRNPH3P31942 346 aaKnown RBP12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 HNF1BP35680 557 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 SCNN1AP37088 669 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 NSFP46459 744 aaKnown RBP12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 SLC6A3Q01959 620 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 RHDQ02161 417 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 TLE3Q04726 772 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 EFEMP1Q12805 493 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 TBX2Q13207 712 aaPredicted RBP12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 TDRD12Q587J7 1177 aaKnown RBP12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 C10orf76Q5T2E6 689 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 HGSNATQ68CP4 663 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 GRAMD4Q6IC98 578 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 OLFML1Q6UWY5 402 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 TPGS1Q6ZTW0 290 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 SLC26A9Q7LBE3 791 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 ZNF571Q7Z3V5 609 aaPredicted RBP12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 PHF13Q86YI8 300 aaPredicted RBP12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 MIB1Q86YT6 1006 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 TERB1Q8NA31 727 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 OR8K1Q8NGG5 319 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 SLC30A5Q8TAD4 765 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 RNF139Q8WU17 664 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 FGF11Q92914 225 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 MRGPRX1Q96LB2 322 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 DNAJC7Q99615 494 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 GPR174Q9BXC1 333 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 NRSN2Q9GZP1 204 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 POPDC2Q9HBU9 364 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 ASNSD1Q9NWL6 643 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 MARCH2Q9P0N8 246 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 STRIP2Q9ULQ0 834 aa12.34□□□□□ -0.43
SQSTM1-206ENST00000466342 PTPN13Q12923 2485 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 NEDD8-MDP1E9PL57 170 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 HSF2BPO75031 334 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 KLKB1P03952 638 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 NTRK1P04629 796 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 FYNP06241 537 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 C6P13671 934 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 IL12RB1P42701 662 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 GRK6P43250 576 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 GSCP56915 257 aaPredicted RBP12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 YWHAZP63104 245 aaKnown RBP12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 PTP4A2Q12974 167 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 C2CD6Q53TS8 623 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms