RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 GOLGA6L6A8MZA4 724 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 WASH3PC4AMC7 463 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 ATMINO43313 823 aaPredicted RBP18.3■□□□□ 0.52
COL7A1-205ENST00000465238 DESP17661 470 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 TFE3P19532 575 aaPredicted RBP18.3■□□□□ 0.52
COL7A1-205ENST00000465238 PTPN9P43378 593 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 ATXN3P54252 364 aaPredicted RBP18.3■□□□□ 0.52
COL7A1-205ENST00000465238 ATP11AP98196 1134 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 MAMLD1Q13495 774 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 ENPP2Q13822 863 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 EIF4HQ15056 248 aaKnown RBP18.3■□□□□ 0.52
COL7A1-205ENST00000465238 GEN1Q17RS7 908 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 CCDC14Q49A88 953 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 ANKS1BQ7Z6G8 1248 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 METTL3Q86U44 580 aaKnown RBP18.3■□□□□ 0.52
COL7A1-205ENST00000465238 SLC41A1Q8IVJ1 513 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 FAM217AQ8IXS0 508 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 ERLEC1Q96DZ1 483 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 HSPA12BQ96MM6 686 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 MCEEQ96PE7 176 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 SLC32A1Q9H598 525 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 WDCPQ9H6R7 721 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 CAPN10Q9HC96 672 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 MRPL47Q9HD33 250 aaKnown RBP18.3■□□□□ 0.52
COL7A1-205ENST00000465238 PIGVQ9NUD9 493 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 IMPACTQ9P2X3 320 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 THAP10Q9P2Z0 257 aaPredicted RBP18.3■□□□□ 0.52
COL7A1-205ENST00000465238 SCINQ9Y6U3 715 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 GOLGA6L7A0A1B0GV03 622 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 KCNU1A8MYU2 1149 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 TSPAN3O60637 253 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 NDUFS2O75306 463 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 RDXP35241 583 aaKnown RBP18.29■□□□□ 0.52
COL7A1-205ENST00000465238 CXCR3P49682 368 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 RPL7AP62424 266 aaKnown RBP18.29■□□□□ 0.52
COL7A1-205ENST00000465238 CDO1Q16878 200 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 ASTE1Q2TB18 679 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-205ENST00000465238 FUT11Q495W5 492 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 MPPE1Q53F39 396 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 BRMS1LQ5PSV4 323 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 PPP1R15BQ5SWA1 713 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 OTUD1Q5VV17 481 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-205ENST00000465238 KIAA1324Q6UXG2 1013 aaKnown RBP18.29■□□□□ 0.52
COL7A1-205ENST00000465238 SPC24Q8NBT2 197 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 DEFB124Q8NES8 71 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 DDI1Q8WTU0 396 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 FOXJ1Q92949 421 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 TMA16Q96EY4 203 aaKnown RBP18.29■□□□□ 0.52
COL7A1-205ENST00000465238 ZNF419Q96HQ0 510 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-205ENST00000465238 PANX2Q96RD6 677 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 IRX2Q9BZI1 471 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-205ENST00000465238 SLC6A17Q9H1V8 727 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 PRDM16Q9HAZ2 1276 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 ELOVL2Q9NXB9 296 aa18.29■□□□□ 0.52
COL7A1-205ENST00000465238 PCDH15Q96QU1 1955 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 CHD6Q8TD26 2715 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 UPK3BL1B0FP48 263 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 UPK3BL2E5RIL1 263 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 ENDOD1O94919 500 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 IL12RB1P42701 662 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 ZNF143P52747 638 aaPredicted RBP18.28■□□□□ 0.52
COL7A1-205ENST00000465238 FOXC1Q12948 553 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 SEMA3BQ13214 749 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 C15orf59Q2T9L4 293 aaPredicted RBP18.28■□□□□ 0.52
COL7A1-205ENST00000465238 SYCP2LQ5T4T6 812 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 RFWD3Q6PCD5 774 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 HDDC3Q8N4P3 179 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 CNPY3Q9BT09 278 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 GTPBP2Q9BX10 602 aaKnown RBP18.28■□□□□ 0.52
COL7A1-205ENST00000465238 ADAM33Q9BZ11 813 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 TKTL2Q9H0I9 626 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 THAP2Q9H0W7 228 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 SUSD2Q9UGT4 822 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 CKAP5Q14008 2032 aa18.28■□□□□ 0.52
COL7A1-205ENST00000465238 TYW5A2RUC4 315 aaKnown RBP18.27■□□□□ 0.52
COL7A1-205ENST00000465238 ARHGAP33O14559 1287 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 TIMM44O43615 452 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 SYNCRIPO60506 623 aaKnown RBP18.27■□□□□ 0.52
COL7A1-205ENST00000465238 SYPP08247 313 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 H2AFZP0C0S5 128 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 CD6P30203 668 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 GALCP54803 685 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 FAM133BQ5BKY9 247 aaKnown RBP18.27■□□□□ 0.52
COL7A1-205ENST00000465238 WDR45BQ5MNZ6 344 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 RAP1GAP2Q684P5 730 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 NADSYN1Q6IA69 706 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 H2AFVQ71UI9 128 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 STRADAQ7RTN6 431 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 BNIPLQ7Z465 357 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 CHSY1Q86X52 802 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 RGL4Q8IZJ4 473 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 FAM172AQ8WUF8 416 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 CENPIQ92674 756 aaPredicted RBP18.27■□□□□ 0.52
COL7A1-205ENST00000465238 MKRN2Q9H000 416 aaKnown RBP18.27■□□□□ 0.52
COL7A1-205ENST00000465238 GRPEL1Q9HAV7 217 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 CD93Q9NPY3 652 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 ITM2CQ9NQX7 267 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 SPTLC3Q9NUV7 552 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 ARHGEF38Q9NXL2 777 aa18.27■□□□□ 0.52
COL7A1-205ENST00000465238 USP36Q9P275 1121 aaKnown RBP18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms