RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 CAMK1DQ8IU85 385 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 SLC25A41Q8N5S1 370 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 PGBD4Q96DM1 585 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 CCDC126Q96EE4 140 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 NAT9Q9BTE0 207 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 MYH11P35749 1972 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 GPR182O15218 404 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 KCNN4O15554 427 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 PROSCO94903 275 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 TGDSO95455 350 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 SERPINA6P08185 405 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 CCNA2P20248 432 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 IL12AP29459 219 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 TUBA1BP68363 451 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 ANO7Q6IWH7 933 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 KYAT3Q6YP21 454 aaKnown RBP6.32□□□□□ -1.4
VPS13D-202ENST00000460333 TUBA1AQ71U36 451 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 APPL2Q8NEU8 664 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 SUN5Q8TC36 379 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 MCRS1Q96EZ8 462 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 TMEM176AQ96HP8 235 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 HES6Q96HZ4 224 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 PPP1R2P1Q96PQ5 205 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 TEX12Q9BXU0 123 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 SLC8A2Q9UPR5 921 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 TMA7Q9Y2S6 64 aaKnown RBP6.32□□□□□ -1.4
VPS13D-202ENST00000460333 SH3BP1Q9Y3L3 701 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 HEY1Q9Y5J3 304 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 SNX9Q9Y5X1 595 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 AP4B1Q9Y6B7 739 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 A8MUI8 341 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 MTA2O94776 668 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 BAIAP3O94812 1187 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 MFN2O95140 757 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 ALOX15P16050 662 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-202ENST00000460333 TCN1P20061 433 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-202ENST00000460333 GJA5P36382 358 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 CDH6P55285 790 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 TMEM62Q0P6H9 643 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 PKN2Q16513 984 aaKnown RBP6.32□□□□□ -1.4
VPS13D-202ENST00000460333 C11orf91Q3C1V1 193 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 ARL13BQ3SXY8 428 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 TAPT1Q6NXT6 567 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 AKAP14Q86UN6 197 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 ECHDC2Q86YB7 292 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 PHF13Q86YI8 300 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-202ENST00000460333 DHRSXQ8N5I4 330 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 FLCNQ8NFG4 579 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 OR5B17Q8NGF7 314 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 LMO3Q8TAP4 145 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 PYDC1Q8WXC3 89 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.32□□□□□ -1.4
VPS13D-202ENST00000460333 RBBP8Q99708 897 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 SSU72Q9NP77 194 aaKnown RBP6.32□□□□□ -1.4
VPS13D-202ENST00000460333 BARX2Q9UMQ3 279 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-202ENST00000460333 CCDC78A2IDD5 438 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 CCDC162PA2VCL2 907 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 MAP3K13O43283 966 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 TM7SF2O76062 418 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 POLBP06746 335 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 RALBP11234 206 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 SDC4P31431 198 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 TNFSF9P41273 254 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 ACADSBP45954 432 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 TAF6P49848 677 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 PTPN11Q06124 597 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-202ENST00000460333 ZBTB41Q5SVQ8 909 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 PPP4R4Q6NUP7 873 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 DSTYKQ6XUX3 929 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 NUDT18Q6ZVK8 323 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 ARCQ7LC44 396 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 SLFN11Q7Z7L1 901 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 PALB2Q86YC2 1186 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 FITM2Q8N6M3 262 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 MS4A4AQ96JQ5 239 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 DDX50Q9BQ39 737 aaKnown RBP6.32□□□□□ -1.4
VPS13D-202ENST00000460333 LRRC19Q9H756 370 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 FANCEQ9HB96 536 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 LRRC4Q9HBW1 653 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 STK39Q9UEW8 545 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 PSMD13Q9UNM6 376 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 INPP5FQ9Y2H2 1132 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 ATMINO43313 823 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-202ENST00000460333 KATNA1O75449 491 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 RRM1P23921 792 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 FDFT1P37268 417 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 HADHAP40939 763 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 KCNK10P57789 538 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 TRIM25Q14258 630 aaKnown RBP6.32□□□□□ -1.4
VPS13D-202ENST00000460333 BROXQ5VW32 411 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 RWDD4Q6NW29 188 aaKnown RBP6.32□□□□□ -1.4
VPS13D-202ENST00000460333 TAS1R3Q7RTX0 852 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 CTU1Q7Z7A3 348 aaKnown RBP6.32□□□□□ -1.4
VPS13D-202ENST00000460333 IFNL1Q8IU54 200 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 P3H2Q8IVL5 708 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 LRRC57Q8N9N7 239 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 PDCD6IPQ8WUM4 868 aaKnown RBP6.32□□□□□ -1.4
VPS13D-202ENST00000460333 SEPT8Q92599 483 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 OSMRQ99650 979 aa6.32□□□□□ -1.4
VPS13D-202ENST00000460333 DENND2DQ9H6A0 471 aaPredicted RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms