RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 PPP6R3Q5H9R7 873 aaPredicted RBP16.3■□□□□ 0.2
SNX17-204ENST00000453453 NUGGCQ68CJ6 796 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 MIB1Q86YT6 1006 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.3■□□□□ 0.2
SNX17-204ENST00000453453 MRPS31Q92665 395 aaKnown RBP16.3■□□□□ 0.2
SNX17-204ENST00000453453 SNF8Q96H20 258 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 CORO1BQ9BR76 489 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 TKTL2Q9H0I9 626 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 PRO3102Q9H379 93 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 ZNF334Q9HCZ1 680 aaPredicted RBP16.3■□□□□ 0.2
SNX17-204ENST00000453453 NKIRAS1Q9NYS0 192 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 HBS1LQ9Y450 684 aaKnown RBP16.3■□□□□ 0.2
SNX17-204ENST00000453453 DENND4CQ5VZ89 1909 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 hCG_1818297A0A087WSY0 165 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 A0A1W2PPC1 479 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 SLC12A8A0AV02 714 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 EPOPA6NHQ4 379 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 SMIM23A6NLE4 172 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 H3BRJ5 948 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 CDH16O75309 829 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 LMNAP02545 664 aaKnown RBP16.29■□□□□ 0.2
SNX17-204ENST00000453453 F11P03951 625 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 PTPN2P17706 415 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 GABRR2P28476 465 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 L1CAMP32004 1257 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 ZNF135P52742 658 aaPredicted RBP16.29■□□□□ 0.2
SNX17-204ENST00000453453 MLLT1Q03111 559 aaPredicted RBP16.29■□□□□ 0.2
SNX17-204ENST00000453453 DPYSL3Q14195 570 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 STAT4Q14765 748 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 ANKRD20A2Q5SQ80 823 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 ANKRD20A1Q5TYW2 823 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 ANKRD20A3Q5VUR7 823 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 KAZNQ674X7 775 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 ADAT2Q7Z6V5 191 aaKnown RBP16.29■□□□□ 0.2
SNX17-204ENST00000453453 ADGRD2Q7Z7M1 963 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 RFX6Q8HWS3 928 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 LEMD2Q8NC56 503 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 SH3GL3Q99963 347 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 CCDC77Q9BR77 488 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 ZNF670Q9BS34 389 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 HEMGNQ9BXL5 484 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 PPCSQ9HAB8 311 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 PCDH18Q9HCL0 1135 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 RCOR3Q9P2K3 495 aaPredicted RBP16.29■□□□□ 0.2
SNX17-204ENST00000453453 STARD13Q9Y3M8 1113 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 L3MBTL1Q9Y468 752 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 LRRC42Q9Y546 428 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 HCFC2Q9Y5Z7 792 aa16.29■□□□□ 0.2
SNX17-204ENST00000453453 C3orf70A6NLC5 250 aaPredicted RBP16.28■□□□□ 0.2
SNX17-204ENST00000453453 POU2F2P09086 479 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 SRGAP2BP0DMP2 458 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 MYL4P12829 197 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 STX2P32856 288 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 GCKP35557 465 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 ARSEP51690 589 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 IL9RQ01113 521 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 RING1Q06587 406 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 SETDB1Q15047 1291 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 TAZQ16635 292 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 CA9Q16790 459 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 WASHC2DQ5SRD0 308 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 ENDOVQ8N8Q3 282 aaKnown RBP16.28■□□□□ 0.2
SNX17-204ENST00000453453 ATP6V0D2Q8N8Y2 350 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 SPDL1Q96EA4 605 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 KCTD15Q96SI1 283 aaPredicted RBP16.28■□□□□ 0.2
SNX17-204ENST00000453453 EPAS1Q99814 870 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 PRDM16Q9HAZ2 1276 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 TRPC7Q9HCX4 862 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 DZANK1Q9NVP4 752 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 ARHGEF38Q9NXL2 777 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 MYO7AQ13402 2215 aa16.28■□□□□ 0.2
SNX17-204ENST00000453453 COCHO43405 550 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 RFPL2O75678 378 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 DCTN3O75935 186 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 TBX18O95935 607 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 KRT10P13645 584 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 BRAFP15056 766 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 RASSF2P50749 326 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 MRPS35P82673 323 aaKnown RBP16.27■□□□□ 0.2
SNX17-204ENST00000453453 COG7P83436 770 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 EIF4EBP2Q13542 120 aaPredicted RBP16.27■□□□□ 0.2
SNX17-204ENST00000453453 LLGL1Q15334 1064 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 ACBD5Q5T8D3 534 aaPredicted RBP16.27■□□□□ 0.2
SNX17-204ENST00000453453 PDZD4Q76G19 769 aaPredicted RBP16.27■□□□□ 0.2
SNX17-204ENST00000453453 TMC8Q8IU68 726 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 UNC45BQ8IWX7 931 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 LMNTD2Q8IXW0 634 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 FITM2Q8N6M3 262 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 HAPLN3Q96S86 360 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 PRKD2Q9BZL6 878 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 ATXN3LQ9H3M9 355 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 ZNF576Q9H609 170 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 NSUN3Q9H649 340 aaKnown RBP16.27■□□□□ 0.2
SNX17-204ENST00000453453 RNPEPL1Q9HAU8 725 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 IL21Q9HBE4 155 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 SENP1Q9P0U3 644 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 USH1CQ9Y6N9 552 aa16.27■□□□□ 0.2
SNX17-204ENST00000453453 RFXAPO00287 272 aa16.27■□□□□ 0.19
SNX17-204ENST00000453453 EEF2KO00418 725 aaKnown RBP16.27■□□□□ 0.19
SNX17-204ENST00000453453 TRAFD1O14545 582 aaPredicted RBP16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms