RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 PRICKLE1Q96MT3 831 aaPredicted RBP18.61■□□□□ 0.57
SQSTM1-204ENST00000453046 TMEM245Q9H330 911 aa18.61■□□□□ 0.57
SQSTM1-204ENST00000453046 SLC12A6Q9UHW9 1150 aa18.61■□□□□ 0.57
SQSTM1-204ENST00000453046 TPRP12270 2363 aaKnown RBP18.61■□□□□ 0.57
SQSTM1-204ENST00000453046 SYNJ2BP-COX16A0A087WUM0 186 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 SYPP08247 313 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 MMEP08473 750 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 CHRNB2P17787 502 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 MAOBP27338 520 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 PI4KAP42356 2102 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 SNX16P57768 344 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 CAMK2GQ13555 558 aaPredicted RBP18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 PLEKHG6Q3KR16 790 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 ZC3H12AQ5D1E8 599 aaKnown RBP18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 EFHC1Q5JVL4 640 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 TAF3Q5VWG9 929 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 PPP1R2P3Q6NXS1 205 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 KIAA1328Q86T90 577 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 FAM124AQ86V42 546 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 CHSY1Q86X52 802 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 CFAP52Q8N1V2 620 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 HDDC3Q8N4P3 179 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 ATP6V0D2Q8N8Y2 350 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 RNF34Q969K3 372 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 PDCL3Q9H2J4 239 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 SLC32A1Q9H598 525 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 SYNCQ9H7C4 482 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 FAM204AQ9H8W3 233 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 CAPN10Q9HC96 672 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 SEPT11Q9NVA2 429 aaKnown RBP18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 COX16Q9P0S2 106 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 SUN2Q9UH99 717 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 ANGPTL2Q9UKU9 493 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 PCDHGC3Q9UN70 934 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 CEP83Q9Y592 693 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 CEP192Q8TEP8 1941 aa18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 TNRC6BQ9UPQ9 1833 aaKnown RBP18.6■□□□□ 0.57
SQSTM1-204ENST00000453046 H0Y626 953 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 ARHGAP33O14559 1287 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 GIPC1O14908 333 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 OPHN1O60890 802 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 MOCS3O95396 460 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 LSM8O95777 96 aaKnown RBP18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 GZMAP12544 262 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 CEACAM1P13688 526 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 CSRP1P21291 193 aaKnown RBP18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 TAF5Q15542 800 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 PTPRNQ16849 979 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 RAP1GAP2Q684P5 730 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 OR6B2Q6IFH4 312 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 ALKBH5Q6P6C2 394 aaKnown RBP18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 LGI2Q8N0V4 545 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 C1orf131Q8NDD1 294 aaKnown RBP18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 CADM4Q8NFZ8 388 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 BTN2A3PQ96KV6 586 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 CPXM1Q96SM3 734 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 TSGA10Q9BZW7 698 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 MIR1-1HGQ9H1L0 117 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 LHX5Q9H2C1 402 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 FBRSQ9HAH7 460 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.59■□□□□ 0.573e-6■■□□□ 13.4
SQSTM1-204ENST00000453046 XPO7Q9UIA9 1087 aaKnown RBP18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 INTUQ9ULD6 942 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 PCDHA13Q9Y5I0 950 aa18.59■□□□□ 0.57
SQSTM1-204ENST00000453046 ZNF500O60304 480 aaPredicted RBP18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 HSF2BPO75031 334 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 GRAP2O75791 330 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 DNTTP04053 509 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 ASLP04424 464 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 GLI1P08151 1106 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 SLC2A3P11169 496 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 ABCB4P21439 1286 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 TACR2P21452 398 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 PMLP29590 882 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 MAGEA1P43355 309 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 ZNF252P-AS1Q0IIN9 211 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 CCDC122Q5T0U0 273 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 DCAF12L1Q5VU92 463 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 DEFB106AQ8N104 65 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 WDTC1Q8N5D0 677 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 MINDY1Q8N5J2 469 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 DEFB124Q8NES8 71 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 MYEOVQ96EZ4 313 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 PRSS16Q9NQE7 514 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 ASNSD1Q9NWL6 643 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 DDIT4Q9NX09 232 aa18.58■□□□□ 0.56
SQSTM1-204ENST00000453046 USP27XA6NNY8 438 aa18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 KCNU1A8MYU2 1149 aa18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 F5H5T6 163 aa18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 PJA2O43164 708 aa18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 LUC7L3O95232 432 aaKnown RBP18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 IGLV3-19P01714 112 aa18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 CYP1A1P04798 512 aaPredicted RBP18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 CCR1P32246 355 aa18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 CSKP41240 450 aa18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 PITX1P78337 314 aaPredicted RBP18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 CLEC16AQ2KHT3 1053 aa18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 FAM183BPQ6ZVS7 135 aa18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 REXO1L1PQ8IX06 675 aa18.57■□□□□ 0.56
SQSTM1-204ENST00000453046 C17orf53Q8N3J3 647 aaPredicted RBP18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms