RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TRIM32Q13049 653 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 SGO1Q5FBB7 561 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 ACBD5Q5T8D3 534 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-213ENST00000448038 PDPK2PQ6A1A2 396 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 MYO1HQ8N1T3 1032 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 BTN2A3PQ96KV6 586 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 LPIN3Q9BQK8 851 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 BBS2Q9BXC9 721 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 ZDHHC6Q9H6R6 413 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 ECT2Q9H8V3 914 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 RWDD3Q9Y3V2 267 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 NRAPQ86VF7 1730 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 NCF1BA6NI72 391 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-213ENST00000448038 NCF1CA8MVU1 366 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-213ENST00000448038 A8MX80 341 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 GOLGA8TH3BQL2 631 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 PPEF2O14830 753 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 NCF1P14598 390 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-213ENST00000448038 IRAK1P51617 712 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 RABGGTBP53611 331 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 HTRA3P83110 453 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 SATB1Q01826 763 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 FPGSQ05932 587 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 KDSRQ06136 332 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 CUL3Q13618 768 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 TRIM60Q495X7 471 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 CNKSR3Q6P9H4 555 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 CFAP52Q8N1V2 620 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 LRRC39Q96DD0 335 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 SYNDIG1Q9H7V2 258 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 XIRP1Q702N8 1843 aaKnown RBP7.56□□□□□ -1.2
SYNE1-213ENST00000448038 DNM1LO00429 736 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 ENO1P06733 434 aaKnown RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 SNRPD1P62314 119 aaKnown RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 C1orf146Q5VVC0 180 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 KDM7AQ6ZMT4 941 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 ARID3BQ8IVW6 561 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 RNF217Q8TC41 542 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 AENQ8WTP8 325 aaKnown RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 ERLEC1Q96DZ1 483 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 SEMA3CQ99985 751 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 TCF25Q9BQ70 676 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 HAUS8Q9BT25 410 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 MRPL40Q9NQ50 206 aaKnown RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 CFAP97Q9P2B7 532 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 CDYLQ9Y232 598 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 CASQ2O14958 399 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 DDX3YO15523 660 aaKnown RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 PAPSS1O43252 624 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 KCNE1P15382 129 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 SP100P23497 879 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 CALRP27797 417 aaKnown RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 ANKRD20A4Q4UJ75 823 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 MORN1Q5T089 497 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 GRTP1Q5TC63 336 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 CCDC126Q96EE4 140 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 CSPG4P5Q96PW8 444 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 SHCBP1LQ9BZQ2 653 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 SLC7A5P2Q9GIP4 190 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 IL22Q9GZX6 179 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 CYP4F12Q9HCS2 524 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 SALL4Q9UJQ4 1053 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 ABHD14A-ACY1A0A1B0GW23 586 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 ARHGAP10A1A4S6 786 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 KDM1AO60341 852 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 CYP2A6P11509 494 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 PPP3CCP48454 512 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 DAOAP59103 153 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 CRADDP78560 199 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 TAS1R3Q7RTX0 852 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 TRIM48Q8IWZ4 208 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 GRIN3AQ8TCU5 1115 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 SMG7Q92540 1137 aaKnown RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 SPDL1Q96EA4 605 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 B3GALT6Q96L58 329 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 FAM161BQ96MY7 647 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 ILKAPQ9H0C8 392 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 STYXL1Q9Y6J8 313 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 TIAM2Q8IVF5 1701 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 ANGPT2O15123 496 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 FGF19O95750 216 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 RBP1P09455 135 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 UNGP13051 313 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 PTPN9P43378 593 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 MAXP61244 160 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 FOXD4Q12950 439 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 LPIN1Q14693 890 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 ACOX1Q15067 660 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 TAF5Q15542 800 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 PSRC1Q6PGN9 363 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 PLEKHO2Q8TD55 490 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 USP6NLQ92738 828 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 SEC16BQ96JE7 1060 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 CPNE1Q99829 537 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 KDM4CQ9H3R0 1056 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 NDE1Q9NXR1 346 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 ANGPTL2Q9UKU9 493 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 MTO1Q9Y2Z2 717 aaKnown RBP7.55□□□□□ -1.2
SYNE1-213ENST00000448038 ORC6Q9Y5N6 252 aa7.55□□□□□ -1.2
SYNE1-213ENST00000448038 ADAMTS7Q9UKP4 1686 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms